PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00951.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 221aa    MW: 25230.4 Da    PI: 5.3596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00951.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-0881125147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              + +W  +E+e ++ + +++G + W++Ia  +g ++t+ q+  + +k+
  Rsa1.0_00951.1_g00007.1  81 KPKWDIDEHEWFLIGLRRYGRK-WDKIAVLLG-TKTPMQVAIYARKF 125
                              579*****************99.*********.****9998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.711152IPR017884SANT domain
SMARTSM007170.011253IPR001005SANT/Myb domain
SuperFamilySSF466896.95E-9457IPR009057Homeodomain-like
CDDcd001671.90E-4551No hitNo description
PROSITE profilePS512939.93879130IPR017884SANT domain
SuperFamilySSF466899.72E-979127IPR009057Homeodomain-like
SMARTSM007172.5E-580128IPR001005SANT/Myb domain
PfamPF002492.2E-681124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-481119IPR009057Homeodomain-like
CDDcd001672.98E-583126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAANSWTKEE NELFKNAVEC FSAFSPNRFE RIAHFVWRPV VEVIEHYQEM VDDLLEIRSS  60
QIALSNGMFD AVLPSWCRVE KPKWDIDEHE WFLIGLRRYG RKWDKIAVLL GTKTPMQVAI  120
YARKFFTWHN PGNNVMKRRR TMEITMGDTS VDSSSPQKRT SGDINMDSTG QQERTMGGIN  180
VDSTGQHESL VPLQPQPQQG PVALEIGQDA SISDSESNNL P
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00951.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435335.11e-166PREDICTED: uncharacterized protein LOC108807556
TrEMBLA0A398ATA41e-99A0A398ATA4_BRACM; Uncharacterized protein
STRINGBo1g142600.16e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-24MYB family protein