PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00951.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 198aa    MW: 23026.8 Da    PI: 6.681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00951.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.28.9e-1487131347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++++ ++ G+g+W+ I+r++  ++   q+ s+ qky
  Rsa1.0_00951.1_g00009.1  87 PWTEEEHRLFLEGLEKCGKGNWRDISRKIVRTKNSAQVASHAQKY 131
                              7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.582155IPR017884SANT domain
SMARTSM007171.1E-4253IPR001005SANT/Myb domain
SuperFamilySSF466899.41E-8458IPR009057Homeodomain-like
CDDcd001670.00394651No hitNo description
Gene3DG3DSA:1.10.10.601.8E-978140IPR009057Homeodomain-like
PROSITE profilePS5129418.07880136IPR017930Myb domain
SuperFamilySSF466893.01E-1483135IPR009057Homeodomain-like
SMARTSM007172.4E-984134IPR001005SANT/Myb domain
TIGRFAMsTIGR015577.2E-1585135IPR006447Myb domain, plants
CDDcd001678.53E-987132No hitNo description
PfamPF002492.5E-1187131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGPKQWTRDD DKLFERLLLE FPENTPYRFE IIAVHLEKPL EEVKHYYEAL VHDINLIESG  60
RCPTTNYPDG IPSETEHMEK EKTRGIPWTE EEHRLFLEGL EKCGKGNWRD ISRKIVRTKN  120
SAQVASHAQK YFLRQVAKKN AKKRSSIHDI TLIDHAANNV TAPQSDLDST MGQPPSDQQG  180
LQDHHLSNED FWIRKLNS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00344DAPTransfer from AT3G10580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00951.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438383.11e-148PREDICTED: transcription factor DIVARICATA-like
TrEMBLM4EZ871e-108M4EZ87_BRARP; Uncharacterized protein
STRINGBra034130.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.24e-56MYB_related family protein