PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00959.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 212aa    MW: 24054.3 Da    PI: 9.5311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00959.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.53.8e-34151411128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWka 85 
                              lp G+rFhPtd+el+ +yL +k+ +++l+  ++i+ +d+++++P ++p   ++ee++ yfF+k++++ ++  +r + +  +gyWk 
  Rsa1.0_00959.1_g00004.1  15 LPIGYRFHPTDQELILHYLLPKAFASPLPS-SIIPVFDVFSTHPLTFPG--DQEENKRYFFCKKRSEVSSnAHRIKISSGDGYWKP 97 
                              699*************************99.88***************3..4577899****999888751556666899****** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              t k++e+++  g+ vg+++tL+fy  +++++k +kt+W m ey l
  Rsa1.0_00959.1_g00004.1  98 TRKEREIIA-CGRRVGIRRTLAFYetNKSSSKCNKTRWSMTEYCL 141
                              *********.999***********4434667778*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-409160IPR003441NAC domain
PROSITE profilePS5100538.42915161IPR003441NAC domain
PfamPF023651.9E-2016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEVEKRTMVN GGMKLPIGYR FHPTDQELIL HYLLPKAFAS PLPSSIIPVF DVFSTHPLTF  60
PGDQEENKRY FFCKKRSEVS SNAHRIKISS GDGYWKPTRK EREIIACGRR VGIRRTLAFY  120
ETNKSSSKCN KTRWSMTEYC LAGFASTKVS GDWAVYNVYE RKVSKGRRQR KSSGRFDEEE  180
LSCIDFTIGS DHETGPPPPS PPTSADESGS II
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-2011621169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00959.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667600.0KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445335.11e-158PREDICTED: NAC domain-containing protein 41
TrEMBLV4LG111e-126V4LG11_EUTSA; Uncharacterized protein
STRINGXP_006399904.11e-127(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-114NAC domain containing protein 84