PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00962.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 198aa MW: 23191.2 Da PI: 7.5043

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00962.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.8	3.3e-27	28	116	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++Y++++GF +r+ + ++s+r+g+i r+f C+keg+ + + k+ + r++r++tr gCka+++vk +++gkw+vtk+++eHnH Rsa1.0_00962.1_g00008.1 28 FYDDYSRSLGFVMRVMSCRRSERDGRILARRFGCNKEGRCVSVRGKSGSVRKPRQSTREGCKAMIHVKYDRSGKWVVTKFVKEHNH 113 9************************************99999999************************************* PP FAR1 88 ela 90 +l+ Rsa1.0_00962.1_g00008.1 114 PLV 116 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-25	28	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAVEDDDSTI EEPREGTEFE SEEAAKTFYD DYSRSLGFVM RVMSCRRSER DGRILARRFG 60 CNKEGRCVSV RGKSGSVRKP RQSTREGCKA MIHVKYDRSG KWVVTKFVKE HNHPLVVEPR 120 QARQSLDEKD KRIHELTIEL RNEKRLCAAY KEQLDAFAKI VEEYSNRMSR KVESVVENLK 180 EFEHVEVELL HSKEDDIF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00962.1_g00008.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480754.1	1e-144	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	3e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M4F9G0	1e-125	M4F9G0_BRARP; Uncharacterized protein
STRING	Bra037723.1-P	1e-125	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-117	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]