PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00964.1_g00023.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 293aa MW: 32120.6 Da PI: 6.6377

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00964.1_g00023.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	54.4	2.8e-17	136	183	3	50
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +lkr rr+++NRe+ArrsR+RK+++++ Le v++L++eN++L k+l Rsa1.0_00964.1_g00023.1 136 ALKRMRRMYSNRESARRSRRRKQEQLADLESQVDSLKGENSTLYKQLI 183 79*****************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.6E-12	129	183	No hit	No description
SMART	SM00338	7.3E-12	134	198	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-15	136	182	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.921	136	182	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.13E-12	137	184	No hit	No description
PROSITE pattern	PS00036	0	141	156	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDGHTAKDTG MKRSASELAL QEYLTKVLSS SALSRQESSL DTNPLDPSFV PMNKDHTGEV 60 RDSHLLSESL IPAGFLLDAQ SSICENLSAD SPVSANKPEV RRRARRTASV STHDRSDEED 120 AETEAGQSEM TNDPNALKRM RRMYSNRESA RRSRRRKQEQ LADLESQVDS LKGENSTLYK 180 QLIDATQLFR SAGTNNRILK SDVETLRIKV KLAEDLVARG SFTSSLNQLL QTHLRPSPQS 240 TNSLHYTGST SPAVTVHSDQ SMLPGITLSG QNSSTGLGNV SSEAVSCVSD IWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	157	RRSRRRKQ
2	152	157	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00964.1_g00023.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483928.1	0.0	PREDICTED: basic leucine zipper 9 isoform X1
Swissprot	Q9FUD3	1e-159	BZIP9_ARATH; Basic leucine zipper 9
TrEMBL	A0A0D3DD03	0.0	A0A0D3DD03_BRAOL; Uncharacterized protein
STRING	Bo7g096540.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6370	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-144	basic leucine zipper 9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ortiz-Espín A, et al. Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions. J. Exp. Bot., 2017. 68(5): p. 1025-1038 [PMID:28184497] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]