PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00977.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 203aa    MW: 22502.2 Da    PI: 8.6384
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00977.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-201968255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrdp +   + r++lg+f++aeeAa+a++aa+++l+g
  Rsa1.0_00977.1_g00016.1 19 RYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDAAARNLRG 68
                             69*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-141968IPR001471AP2/ERF domain
CDDcd000183.34E-171975No hitNo description
Gene3DG3DSA:3.30.730.108.9E-321976IPR001471AP2/ERF domain
PROSITE profilePS5103223.4461976IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-221977IPR016177DNA-binding domain
SMARTSM003801.1E-371982IPR001471AP2/ERF domain
PRINTSPR003675.3E-112031IPR001471AP2/ERF domain
PRINTSPR003675.3E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRKGRGSSVV PPALPGSVRY RGVRKRPWGR FAAEIRDPLK KSRVWLGTFD SAEEAARAYD  60
AAARNLRGPK AKTNFHIDSS PLNHRNQNRI DPFMDHRLHG VEEEEEEVII SRPASSIMSS  120
TVKSCGGSRS VAKRYPRIPP VATEDCRSGC DSSSSVVDDD GDDIASSSSR RKQPFEFDLN  180
FPPLDGVDLF AGAYDLHCTD LRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2019751471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00977.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2479695e-47DQ247969.1 Brassica rapa subsp. pekinensis putative ethylene responsive element binding factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486954.11e-147PREDICTED: ethylene-responsive transcription factor 7-like
SwissprotQ9LDE47e-81ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A078HCE73e-82A0A078HCE7_BRANA; BnaC03g41530D protein
TrEMBLA0A087HB514e-82A0A087HB51_ARAAL; Uncharacterized protein
TrEMBLA0A3P6AYW74e-82A0A3P6AYW7_BRAOL; Uncharacterized protein (Fragment)
STRINGA0A087HB517e-83(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.13e-67ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]