PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00979.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 85aa    MW: 9732.93 Da    PI: 9.894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00979.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07954144
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             r  WT    + + +a + + ++   +W+ +a+ +g g++++++k ++
  Rsa1.0_00979.1_g00004.1  9 RSTWTFKQNKMFERALAVYDKDtpdRWHNVANAVG-GKSAEEVKRHY 54
                             789********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.574458IPR017877Myb-like domain
SMARTSM007177.7E-7860IPR001005SANT/Myb domain
PfamPF002491.3E-5954IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-121065IPR009057Homeodomain-like
CDDcd001675.78E-61154No hitNo description
Gene3DG3DSA:1.10.10.602.0E-41161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASNSKSSRS TWTFKQNKMF ERALAVYDKD TPDRWHNVAN AVGGKSAEEV KRHYDILIED  60
LISIETGRVP LPNYKTFESN SRGIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-31180179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00979.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894932e-90AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469320.13e-58PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1732e-51RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A078I3J24e-50A0A078I3J2_BRANA; BnaA07g32000D protein
TrEMBLA0A397YRT94e-50A0A397YRT9_BRACM; Uncharacterized protein
TrEMBLM4DH794e-50M4DH79_BRARP; Uncharacterized protein
STRINGBra015856.1-P6e-51(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-54RAD-like 6