PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00991.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 402aa MW: 44406 Da PI: 6.4436

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00991.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.7e-10	193	251	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l e+ Rsa1.0_00991.1_g00007.1 193 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTLLQRDTNGLSVEN 251 9********************************************99998877776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-15	189	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	191	254	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-9	193	245	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	193	244	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.5E-11	193	247	No hit	No description
CDD	cd14703	3.89E-26	194	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDKEKSPSGG LPPPSGRYSS FPHLTPPSGS TTTPDANRFC HDISRMPDNP PKNNLGHRRA 60 HSEILTLPDD LSFDSDLGVV GGDGPSFSDD TDEDLMSMYL DMDKFNSSAS SSCEPSELVW 120 RNELGGGGSA GSNLQSTPPS GSERPRIRHQ HSQSMDGSTS IKPEMLMSGN EGVDSKKAIS 180 AAKLSELALI DPKRAKRIWA NRQSAARSKE RKMRYIAELE RKVQTLQTEA TTLSAQLTLL 240 QRDTNGLSVE NHELKLRVQT VEQQVHLQDA LNDALKEEVQ HLKVLTGQGG SNGGASSVMN 300 YGSFGSNQQF YPNNQSMHTM QAAQQFQQLQ IHSQKQQQQQ FQYQQQQQQL YQLQLQLQQQ 360 RIQQQEQQSG VVAEPRRPMS SSSGGQKESV TSPDLESPST KD

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDKEKSPSGG LPPPSGRYSS FPHLTPPSGS TTTPDANRFC HDISRMPDNP PKNNLGHRRA  60
HSEILTLPDD LSFDSDLGVV GGDGPSFSDD TDEDLMSMYL DMDKFNSSAS SSCEPSELVW  120
RNELGGGGSA GSNLQSTPPS GSERPRIRHQ HSQSMDGSTS IKPEMLMSGN EGVDSKKAIS  180
AAKLSELALI DPKRAKRIWA NRQSAARSKE RKMRYIAELE RKVQTLQTEA TTLSAQLTLL  240
QRDTNGLSVE NHELKLRVQT VEQQVHLQDA LNDALKEEVQ HLKVLTGQGG SNGGASSVMN  300
YGSFGSNQQF YPNNQSMHTM QAAQQFQQLQ IHSQKQQQQQ FQYQQQQQQL YQLQLQLQQQ  360
RIQQQEQQSG VVAEPRRPMS SSSGGQKESV TSPDLESPST KD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00991.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353381	0.0	AK353381.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434188.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-163	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A397XPK1	0.0	A0A397XPK1_BRACM; Uncharacterized protein
TrEMBL	M4DG48	0.0	M4DG48_BRARP; Uncharacterized protein
STRING	Bra015471.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-162	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]