PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00991.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 355aa    MW: 38240.8 Da    PI: 8.969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00991.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10270315655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Rsa1.0_00991.1_g00024.1 270 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 315
                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-13267321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-11268319No hitNo description
Gene3DG3DSA:4.10.280.101.1E-11269332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-12270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
GLIRYGSAPG SLLNSMVDEV IGGSNARDFN FPQPDNFLGD FFAGADSSSL RSESMTCGVN  60
SSGGQKHLGN DNNNNNNKDL LLDRSYGGFN EISQHKSINN VGGGGGGSSS GSYSLARQRS  120
SPADFFSYLS GEKNSFSLNQ PTSDYNQQGG SNAGRGPSRL KSQLSFTSHD PLSRISEVNE  180
TSVHEGSGHS FSAAGFGAAT DSWDDGSGSI GFTVTRPTKR PKDMSSGLFS QYSLPSDTSM  240
NYMDNYMQLP EDSVPCKVRA KRGFATHPRS IAERERRTRI SGRLKKLQDL VPNMDKQTSY  300
SDMLDLAVQH IKGLQNQLQN KRTARANAVR DQASLVVQPN GRDAARDQAS LAVQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00991.1_g00024.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3175490.0KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466054.10.0PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1021e-175BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A397XIC00.0A0A397XIC0_BRACM; Uncharacterized protein
TrEMBLM4DG330.0M4DG33_BRARP; Uncharacterized protein
STRINGBra015456.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-161bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]