PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00996.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 449aa    MW: 51355.1 Da    PI: 6.0954
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00996.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.75.5e-23251308155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                              k+r+ Wt +L ++F+ea++  GG+++AtPk +l++   mk++gLt+++v SHLQkYRl
  Rsa1.0_00996.1_g00007.1 251 KQRMLWTADLQQKFLEAINIVGGPKNATPKLLLKClqdMKIEGLTRNNVSSHLQKYRL 308
                              79****************************9876544499*****************8 PP
2Response_reg54.75.7e-19361411106
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vd + + + ++++++e+  y +v++ +d+eea++ l +++  +++++ D  mpg++Gl++l  i ++  +lp++++ + ++ e
  Rsa1.0_00996.1_g00007.1  36 VLVVDASLSTLLNMKEIMERCAY-QVTAYADAEEAIAFLTNSKheINIVIWDYHMPGINGLQALAIIGSKM-DLPVVIMCDDDQTE 119
                              899********************.***************776667**********************6654.8************* PP

                              HHHHHHHTTESEEEESS--HHH CS
             Response_reg  85 dalealkaGakdflsKpfdpee 106
                              ++ +a+  Ga  +++Kp+ +e 
  Rsa1.0_00996.1_g00007.1 120 LVMDAMVHGACHYVMKPIRKEI 141
                              *****************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.41E-2632157IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-2834182No hitNo description
SMARTSM004481.2E-1334145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.44735150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1536143IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.18E-1437145No hitNo description
SuperFamilySSF466891.09E-12249311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-21250312IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-18251308IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSIGNITEDG DNTLLLQQET SKISSPLSEF PPSTNVLVVD ASLSTLLNMK EIMERCAYQV  60
TAYADAEEAI AFLTNSKHEI NIVIWDYHMP GINGLQALAI IGSKMDLPVV IMCDDDQTEL  120
VMDAMVHGAC HYVMKPIRKE IIATMWQHIV RKRMISKPGL VPPIVAHYYC SKQEKDDYVS  180
VDQDDCEQNI DKIEEEATNK RRRRCIGKTH PMQSDLVKSN DSEQDSNDFR SVSNYNGEQS  240
IDKKKERYFK KQRMLWTADL QQKFLEAINI VGGPKNATPK LLLKCLQDMK IEGLTRNNVS  300
SHLQKYRLSL EQNKIPQQLP ETGWSSLCRP SSFLGMNNGF IAPSSLINGP AVYPVQENQY  360
QNGYLAMNNN HFLTNNMPGF PYLNNDHHLQ QQHQQRQYQL PNQVNYMMRR NENQQAYNGI  420
SLTDLESSIY PSLPNDPNEF LFNGYNFSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00996.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450308.10.0PREDICTED: putative two-component response regulator ARR19
TrEMBLA0A3P6F8J40.0A0A3P6F8J4_BRAOL; Uncharacterized protein
STRINGBo00641s030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.15e-71response regulator 19