PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01000.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 255aa    MW: 29388.8 Da    PI: 5.6402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01000.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015115136223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              +C  Cgk F + ++L  H+r+H
  Rsa1.0_01000.1_g00005.1 115 RCCLCGKEFQTMHSLFGHMRRH 136
                              7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.8E-64567No hitNo description
PROSITE profilePS501579.8894572IPR007087Zinc finger, C2H2
SMARTSM003551.14567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139120.00344769IPR007087Zinc finger, C2H2
SuperFamilySSF576674.8E-6109136No hitNo description
PROSITE profilePS501579.806114136IPR007087Zinc finger, C2H2
SMARTSM003550.091114136IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-4115138IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKRTRDDDPS HFLHQSYDDD EEDEEEDSSS GGFQPPSPPP QQVKHFCVIC SKQFSSGKAY  60
GGHVRIHSSE YSSKGKRKKV KTKKRKICLV NKEKEKEKEK EIDLIRADVE REIIRCCLCG  120
KEFQTMHSLF GHMRRHPDRS WKGVRPPLPE KLNLSFLDDD DDDDESDDEG DEVMSGVTKD  180
VHDAARCLMM LKAGKRKATM ETANSEVRSF SYCNDEMDVD TKIKMEIEVN VNNPQDEAKK  240
RSLEIDLNQP CHDSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01000.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436254.10.0PREDICTED: uncharacterized protein LOC108808638
TrEMBLA0A3P6B5I46e-99A0A3P6B5I4_BRACM; Uncharacterized protein
STRINGBra012039.1-P6e-99(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-60C2H2 family protein