PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01001.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 190aa    MW: 21666.4 Da    PI: 9.6414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01001.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-2060109355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ykGVr+++ +g+++AeIrdp   + k +r +lg++ t+eeAa a+++a+ k++g
  Rsa1.0_01001.1_g00002.1  60 YKGVRRRP-WGKYAAEIRDP---NkKGTRMWLGTYETPEEAAVAYDQAAFKMRG 109
                              9*******.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.9E-3759123IPR001471AP2/ERF domain
PROSITE profilePS5103223.99959117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-3359118IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2459118IPR016177DNA-binding domain
CDDcd000189.56E-3160119No hitNo description
PfamPF008472.7E-1460109IPR001471AP2/ERF domain
PRINTSPR003673.2E-136071IPR001471AP2/ERF domain
PRINTSPR003673.2E-1399119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKMEGKHSSN NGSAVLNWIR RELLEEDDID MDLTPSTTLA TDSSSSSEDV RVAPRRGATY  60
KGVRRRPWGK YAAEIRDPNK KGTRMWLGTY ETPEEAAVAY DQAAFKMRGS KAKLNFPHLI  120
SCPHEAEAVK EEEEVTHCGN KRQRSQEHNH HPVVVAKRRN NINIINQMAR LPSLGLKSVF  180
KNTYDDFMRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2756117263ATERF1
3gcc_A1e-2756117263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01001.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453926.11e-121PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A3N6QHF89e-94A0A3N6QHF8_BRACR; Uncharacterized protein
STRINGBo9g001020.13e-76(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-36ethylene-responsive element binding factor 13