PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01002.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 220aa MW: 25060.2 Da PI: 5.1021

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01002.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.4	7.1e-15	33	120	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 k+ + k++++ +p +f+ + g ++ + t+t++++ g + ++++ ++++++++l+kGW+eF++a+ ++eg f+ F ++g+s Rsa1.0_01002.1_g00008.1 33 KII--LPTIKEKMMKIPARFV-RLG--PKLTDTVTIQTPVGFKRSIRI--KRTGNEVWLEKGWSEFAEAHSINEGHFLYFCYEGNS 111 555..66788999******.565..44777************..********************************** PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v++f+ Rsa1.0_01002.1_g00008.1 112 SF--RVMIFDV 120 *9..9999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-20	25	121	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-18	26	121	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.505	29	121	IPR003340	B3 DNA binding domain
CDD	cd10017	2.68E-16	29	119	No hit	No description
SMART	SM01019	5.6E-14	31	121	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-12	34	119	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MNTTRRASAR ITSAASQRRQ KTEPEPAVKK FIKIILPTIK EKMMKIPARF VRLGPKLTDT 60 VTIQTPVGFK RSIRIKRTGN EVWLEKGWSE FAEAHSINEG HFLYFCYEGN SSFRVMIFDV 120 SASEIDYPMD KVHVIESDDD EVMEAMDTDD EEEGFTRVDS SDNDSSDAEA IDLEKLLKKM 180 PRVSVKSETI TIGNINVEET NSIDETQEDK RALRSSKRSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01002.1_g00008.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449383.1	1e-127	PREDICTED: B3 domain-containing protein At1g49475 isoform X1
Swissprot	Q9XIB4	7e-81	Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBL	A0A3P6FM04	1e-118	A0A3P6FM04_BRAOL; Uncharacterized protein
STRING	Bo8g011590.1	1e-119	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	3e-69	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]