PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01006.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 245aa    MW: 25570.5 Da    PI: 4.8163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01006.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-1685134155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Rsa1.0_01006.1_g00016.1  85 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYSTPEMAAAAYDVAALALKG 134
                              68****9.55.6*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-1085134IPR001471AP2/ERF domain
PROSITE profilePS5103219.40186142IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1786144IPR016177DNA-binding domain
SMARTSM003802.9E-2686148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2686144IPR001471AP2/ERF domain
CDDcd000182.52E-1687144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTNPNNAFTE PKAISQASSS SVTIVSARTC GVSLSSSATC EKSCPLTTIT TATVSFAAAT  60
STSGSDNDTL MDTDSGSTSR RKKHPVYRGI RCRSGKWVSE IREPKKTTRV WLGTYSTPEM  120
AAAAYDVAAL ALKGGNVVLN FPESIGSYPL PVSSSADHIR KAAAKAAATV GAAAAATKEG  180
EKKEETYCDG AGSSATEFVD EEELLNMPGL LEDMAKGMMV APPWMGCPPS DDSPGDSDGE  240
SLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1274145275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01006.1_g00016.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894371e-180AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455023.11e-179PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN92e-92ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A078IJF11e-138A0A078IJF1_BRANA; BnaA09g10750D protein
STRINGBra027615.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.17e-40ERF family protein