PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01018.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 284aa    MW: 32061.7 Da    PI: 4.6802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01018.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1898148256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr+++ +g+++AeIrdps+   r r++lg+f taeeAa  +++a+ +++g+
  Rsa1.0_01018.1_g00013.1  98 KYRGVRRRP-WGKFAAEIRDPST---RSRVWLGTFVTAEEAAMVYDRAAIRFRGH 148
                              8********.**********976...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-2998153No hitNo description
PROSITE profilePS5103221.73398155IPR001471AP2/ERF domain
SMARTSM003802.2E-3498161IPR001471AP2/ERF domain
PfamPF008471.5E-1198148IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1998154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-2798153IPR001471AP2/ERF domain
PRINTSPR003675.9E-1099110IPR001471AP2/ERF domain
PRINTSPR003675.9E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MERRTRRVKF TEHHKVTPVL AKPSNDSPRV VRIAYTDPFA TDSSSDDDED DCTSAPRVKR  60
YVEEIRFGET KTSSSSRKPK KGGGERRNDD VSAKPAVKYR GVRRRPWGKF AAEIRDPSTR  120
SRVWLGTFVT AEEAAMVYDR AAIRFRGHNA QTNILAPPPP PPVIDLETVS RCDSASQSLR  180
SPTSVLRFNA NEETEVEIEP IELSSPASLF PDPYSLPDLC LAGECFWDSE TPPEPLFLDE  240
IEIQKPLLNP VIPKEKNEPE DFSFDLSQDF DASPWDVDNF FEDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1999153661ATERF1
3gcc_A2e-1999153661ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01018.1_g00013.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490477.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3741e-106CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A0D3DUW21e-157A0A0D3DUW2_BRAOL; Uncharacterized protein
STRINGBo8g096140.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.17e-92cytokinin response factor 6