PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01023.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-X1
Protein Properties Length: 887aa    MW: 99526.9 Da    PI: 8.3442
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01023.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.5e-05202220120
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                              CG H+C  lCH+GpC +Cp+
  Rsa1.0_01023.1_g00004.1 202 CG-HRCLLLCHPGPCASCPK 220
                              **.***************96 PP
2zf-NF-X120.21.3e-06248273120
                 zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                              CG      +HkC ++CH G+CppC++
  Rsa1.0_01023.1_g00004.1 248 CGsvldceIHKCREICHDGECPPCRE 273
                              66888888****************85 PP
3zf-NF-X116.51.8e-05361380119
                 zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                              CG H+C + CH+GpC + C+
  Rsa1.0_01023.1_g00004.1 361 CGYHRCPERCHRGPCLEtCR 380
                              *****************997 PP
4zf-NF-X119.52.1e-06435459119
                 zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                              CG      +HkCq++CH+G+C pCp
  Rsa1.0_01023.1_g00004.1 435 CGkklrcrNHKCQSPCHRGQCAPCP 459
                              777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.59E-592160No hitNo description
PROSITE profilePS500898.50693156IPR001841Zinc finger, RING-type
PROSITE patternPS01359093155IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.02E-5190238No hitNo description
PfamPF014220.0046202219IPR000967Zinc finger, NF-X1-type
SMARTSM004380.056202220IPR000967Zinc finger, NF-X1-type
CDDcd060081.19E-8244292No hitNo description
PfamPF014222.6E-4248272IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9E-4254273IPR000967Zinc finger, NF-X1-type
CDDcd060084.94E-6297337No hitNo description
PfamPF014220.05307325IPR000967Zinc finger, NF-X1-type
SMARTSM004380.065307326IPR000967Zinc finger, NF-X1-type
CDDcd060089.57E-9351400No hitNo description
PfamPF014220.0013361380IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035361381IPR000967Zinc finger, NF-X1-type
CDDcd060081.36E-6404452No hitNo description
SMARTSM004380.33414433IPR000967Zinc finger, NF-X1-type
PfamPF014221.3416432IPR000967Zinc finger, NF-X1-type
CDDcd060081.58E-10431479No hitNo description
PfamPF014228.3E-4435459IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013441460IPR000967Zinc finger, NF-X1-type
SMARTSM0043876498519IPR000967Zinc finger, NF-X1-type
PfamPF014224.8508518IPR000967Zinc finger, NF-X1-type
PfamPF0142241527536IPR000967Zinc finger, NF-X1-type
SMARTSM0043865527569IPR000967Zinc finger, NF-X1-type
PfamPF014220.078609620IPR000967Zinc finger, NF-X1-type
SMARTSM004388.4609640IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41650668IPR000967Zinc finger, NF-X1-type
PfamPF0142217651667IPR000967Zinc finger, NF-X1-type
SMARTSM0043820713742IPR000967Zinc finger, NF-X1-type
PfamPF014225.7715727IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MAGPTTTGDF RWKSPPQPPP KQQQNISDSD SDSGSDLDNN NNNHQQHRHN DLSNSIFKAY  60
LDCHTSSSSS PSSIELAKIQ SFLSSSSSGA VSCLICLERI KRTDPTWSCT SSCFAVFHLY  120
CIQGWARQCL DVHAALAVTR PSTAETEPVW NCPKCRSSYQ GSKIPSRYLC YCGKEQDPPA  180
DNPWILPHSC GEVCERPLSD NCGHRCLLLC HPGPCASCPK LVKAKCFCGG VEDVRRCGHK  240
LFSCGDVCGS VLDCEIHKCR EICHDGECPP CRERAVYRCS CGKVKEEKDC CERVFRCEGS  300
CENELDCGKH VCERGCHSGQ CGLCPYQGKR SCPCGKKFYQ GLSCDVLAPL CGGTCDKVLG  360
CGYHRCPERC HRGPCLETCR IVVTKSCRCG GTKKQVPCRQ ELVCERRCQR MRDCETHPCR  420
RRCCDGECPP CSEICGKKLR CRNHKCQSPC HRGQCAPCPI MVSISCACGQ THIEVPCGTE  480
KNQRPPRCRK LCNITPLCRH GQNQKPHKCH YGACPPCRLP CDEEYPCGHK CNLRCHGPRP  540
PPNREFILKP TKKMLNIHPE STPGSPCPRC PELVWRPCVG HHLAAERMMV CSDKTQFACD  600
NLCGNPLPCG NHYCSFTCHP LEIRSSSLDK RSESCEKCEL RCRKERSPRC QHPCPRRCHP  660
EDCPPCKTLV KRSCHCGAMV HAFECIEYNT LSEKDQSKAR SCRGPCHRKL PNCTHLCPEI  720
CHPGQCPSPD KCGKKVVVRC KCLTLKKEWL CKDVQAAHRA AGSDPKDVQK NQFGVGLLPC  780
DSNCKSKLQM AESVLQQRNV KEIEEKEEPS GKNATKRRKR RERGQDVKET SRLQKLTVAT  840
KKVVMVVMLI TVLVAVSYYG YKGILWLSDW MNEVEEQRQK SRRYPRI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01023.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529480.0AK352948.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445046.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D3EHK80.0A0A0D3EHK8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E5620.0A0A3P6E562_BRAOL; Uncharacterized protein
STRINGBo9g177030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors