PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01023.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 251aa    MW: 28646.3 Da    PI: 7.1514
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01023.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-1335117286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                              W+++ + +L++a   +  rl+ g+l++++W+ev++++ +++g  r   + +qCk++++ l+k+yk++k+  +       s +++fd
  Rsa1.0_01023.1_g00010.1  35 WSEDATATLLQAWGHRFVRLNFGNLRQNDWKEVADAVnSSHGNGRrpkTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFD 114
                              *************************************956666551226679****************99986......57***** PP

                 trihelix  84 qle 86 
                              +l+
  Rsa1.0_01023.1_g00010.1 115 HLD 117
                              997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2333118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
METTNPPPPA TQSKPQQPHS IGSHRQSSAG REDWWSEDAT ATLLQAWGHR FVRLNFGNLR  60
QNDWKEVADA VNSSHGNGRR PKTDTQCKSR IDTLKKKYKA EKAKLSPSAW RFFDHLDVLI  120
GPVSKKPVEE VVKSGALEPY LSLTGGSLDD DEEEAGDWGF VARKHSRVEE GDLSEESARE  180
ELARTIVKLG EVYERVEVRK QKMMVELEKQ RMEVVKELEL QRMNMLMEMQ LELEKSKNRK  240
RGDGSERVAC T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01023.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892010.0AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467560.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D3EHL11e-124A0A0D3EHL1_BRAOL; Uncharacterized protein
TrEMBLA0A397XYC91e-124A0A397XYC9_BRACM; Uncharacterized protein
TrEMBLA0A3P6EDP81e-124A0A3P6EDP8_BRAOL; Uncharacterized protein
STRINGBo9g177060.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.15e-74sequence-specific DNA binding transcription factors