PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01036.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 555aa    MW: 62754.4 Da    PI: 5.8181
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01036.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.21.1e-2856140187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW++qe+ aL+++r++m+ ++r++++k+plWeevs+km e g++r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqle
  Rsa1.0_01036.1_g00010.1  56 RWPRQETVALLKIRSDMGLAFRDASAKGPLWEEVSRKMGELGYTRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLE 139
                              8********************************************************************975544..6*******8 PP

                 trihelix  87 a 87 
                              a
  Rsa1.0_01036.1_g00010.1 140 A 140
                              5 PP
2trihelix1032.2e-32377462187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k e+ aLi++r+++++++ ++  k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+
  Rsa1.0_01036.1_g00010.1 377 RWPKVEIEALIKLRTNLDSKYLENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLD 461
                              8*********************************************************************8.99***********8 PP

                 trihelix  87 a 87 
                              a
  Rsa1.0_01036.1_g00010.1 462 A 462
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-453115IPR001005SANT/Myb domain
PfamPF138372.2E-1855141No hitNo description
CDDcd122033.93E-2355120No hitNo description
PROSITE profilePS500907.1255113IPR017877Myb-like domain
PROSITE profilePS500907.34370434IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-4372433IPR009057Homeodomain-like
SMARTSM007170.0022374436IPR001005SANT/Myb domain
PfamPF138373.0E-21376463No hitNo description
CDDcd122032.23E-26376441No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MEFGGVTTTT SAATAEAPPP PQSNDAAATE AAAAAATVGA FEVSEEMNDR GFGGNRWPRQ  60
ETVALLKIRS DMGLAFRDAS AKGPLWEEVS RKMGELGYTR NAKKCKEKFE NVYKYHKRTK  120
EGRTGKSEGK TYRFFDQLEA LESHQHQQQQ HQPLQPQPPL RSHNNNSSMF STPPPVTAII  180
PPTTTPSFPN ISGDFLSEDN STSSSSSYST SSDADIGGRN KKKRKRKWKE FFERLMKQVV  240
DKQEELQRQF LEAVEKRERE RMVREESWRA QEMARVNREH EILAQERSMS AAKDAAVMAF  300
LQKFSEKPSQ STAPPQPQPQ TQVNNNNNQT PQPPQPPQPP PPVPQPVVVQ TLDIVKTDNG  360
EQNMTTPVSA SGVSSSRWPK VEIEALIKLR TNLDSKYLEN GPKGPLWEEI SAGMRRLGFN  420
RNSKRCKEKW ENINKYFKKV KESNKKRPQD SKTCPYFHQL DALYRERNKY NNSLASSSST  480
KPDNSAPLMV QPEQQWPPPA TVAHPPPAQP LDQNFDDDEG TDEEEDYDDE EEEEENGEEE  540
FELVPSNDNK TTNNV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226KKKRKRK
2221226KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01036.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792831e-117AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBankCP0026841e-117CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446456.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-139TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A398AB830.0A0A398AB83_BRACM; Uncharacterized protein
STRINGBra008285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-107Trihelix family protein