PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01036.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 569aa    MW: 65146.6 Da    PI: 8.087
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01036.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.52.3e-3042126187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++le
  Rsa1.0_01036.1_g00011.1  42 RWPRPETLALLRIRSEMDKSFRDSTLKAPLWEEISRKMMELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELE 125
                              8********************************************************************975544..6******98 PP

                 trihelix  87 a 87 
                              a
  Rsa1.0_01036.1_g00011.1 126 A 126
                              5 PP
2trihelix108.83.4e-34391476187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k ev aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qle
  Rsa1.0_01036.1_g00011.1 391 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLE 475
                              8*********************************************************************8.9************8 PP

                 trihelix  87 a 87 
                              a
  Rsa1.0_01036.1_g00011.1 476 A 476
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1139101IPR001005SANT/Myb domain
CDDcd122032.77E-2441106No hitNo description
PROSITE profilePS500907.0154199IPR017877Myb-like domain
PfamPF138372.2E-2041126No hitNo description
SMARTSM007179.2E-4388450IPR001005SANT/Myb domain
PROSITE profilePS500907.491390448IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-4390447IPR009057Homeodomain-like
PfamPF138377.0E-24390477No hitNo description
CDDcd122031.37E-25390455No hitNo description
SuperFamilySSF466896.22E-5391482IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSGNSLGLLD SSGGGVGGSA EEEKDMKMEE TNEVGGGGGG SRWPRPETLA LLRIRSEMDK  60
SFRDSTLKAP LWEEISRKMM ELGYKRSAKK CKEKFENVYK YHKRTKEGRT GKSEGKTYRF  120
FEELEAFESQ PAKSPAATTT TIATTPLIPW ISSTTPSTEK TSSPLKHQQH HQVSVKPIAT  180
SPTFLTKQPS STTPFPFYSN NHTTTLDTGH KPTSNDLVNN VSSLNLFSSS TSSSTASDEE  240
DDQEKRSRKK RKYWKGLFTK LTKELMEKQE KMQKRFLESL ENREKERISR EEAWRVQEVA  300
RISREYETLV NERSNAAAKD AAIISFLHKI SGGQQQQQPQ QQPQQNHKVP QRKQYQSEQH  360
SITFESKEPR PVLLETTMKM GNHSLSPSSS RWPKTEVEAL IRIRKNLEAN YQENGTKGPL  420
WEEISAGMRR LGYNRSAKRC KEKWENINKY FKKVKESNKK RPLDSKTCPY FHQLEALYNE  480
RNKSGALPML PLMVTPQRQL LLPQETQTEF ETDHRDRAGN KEGEEEGESE EDDYEDEEEE  540
GEGDNETSEF EIVLNKTSSP MDINNNLFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01036.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446613.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3P6BUA40.0A0A3P6BUA4_BRACM; Uncharacterized protein
STRINGBra015715.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein