PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01043.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 723aa    MW: 79817.1 Da    PI: 5.7243
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01043.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1967123157
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  Rsa1.0_01043.1_g00010.1  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                              688999************************************************995 PP
2START220.84.3e-692544672206
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                              la +a++el+++a+++ep+W++++  ++++e+ ++f+++ +     +++ea+r+s+vv+m++++ ve+l+d++ qW+  +a    +
  Rsa1.0_01043.1_g00010.1 254 LAVAAMEELMRMAQVDEPLWKSLV--LDEEEYARTFPRGIGpkpagFRTEASRESVVVIMNHVNIVEILMDVN-QWSVVFAgmvsR 336
                              6789********************..************999********************************.************ PP

                              EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                    START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                              a+tl+v+s+g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     +R++++ Sg+li+++
  Rsa1.0_01043.1_g00010.1 337 AMTLAVLSTGvagnynGALQVMSAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----ARCRRRASGCLIQEM 418
                              ******************************************************************8....*************** PP

                              CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              +ng+skvtwvehv++++r +h l++++v +g+a+gak+wva l+rqce+
  Rsa1.0_01043.1_g00010.1 419 PNGYSKVTWVEHVEVDDRGVHDLYKHMVCTGHAFGAKRWVAILDRQCER 467
                              ***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2145122IPR009057Homeodomain-like
SuperFamilySSF466894.18E-1959130IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.6E-1865128IPR001356Homeobox domain
PfamPF000463.2E-1767122IPR001356Homeobox domain
CDDcd000868.01E-1967125No hitNo description
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084841.168244470IPR002913START domain
SuperFamilySSF559611.01E-31245469No hitNo description
CDDcd088754.49E-123248466No hitNo description
SMARTSM002345.0E-61253467IPR002913START domain
PfamPF018521.8E-61254467IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-4347432IPR023393START-like domain
SuperFamilySSF559615.5E-26486715No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MFEPNMFLAA MNNEDSNNHN YNHEDNNNNN ERFLRDEEFD SANTKSGSEN QEGGSGNDQD  60
NHHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHHERHEN SHLRAENEKL RGDNIRYREA LANASCPNCG GPTVIGEMSF DEHQLRLENA  180
RLREEIDRIS AIAAKYVGKP VSSYPLMSPP PLPPRPLELA MGNFGGDVYG NNPTDLFKSI  240
TAPTESDKPL IIDLAVAAME ELMRMAQVDE PLWKSLVLDE EEYARTFPRG IGPKPAGFRT  300
EASRESVVVI MNHVNIVEIL MDVNQWSVVF AGMVSRAMTL AVLSTGVAGN YNGALQVMSA  360
EFQVPTPLVP TRETYFARYC KQQADGSWAV VDISLDSLQP NPPARCRRRA SGCLIQEMPN  420
GYSKVTWVEH VEVDDRGVHD LYKHMVCTGH AFGAKRWVAI LDRQCERLAS VMATNISSGE  480
VGVITNQEGR RSMLKLSERM VISFCAGVSA STAHTWTTLS GTGAEDVRVM TRKSVDDPGR  540
PPGIVLSAAT SFWIPVPPKR VFDFLRDENS RNEWDILSNG GVVQEMAHIA NGRDTGNCVS  600
LLRVNSANSS QSNMLILQES CTDPTASFVI YAPVDIVAMN IVLNGGDPDY VALLPSGFAI  660
LPDGNANGGA AGGEGGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASMSC  720
ETA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01043.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447753.10.0PREDICTED: homeobox-leucine zipper protein HDG2
RefseqXP_018447825.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB9DFH80.0B9DFH8_ARATH; AT1G05230 protein
STRINGAT1G05230.40.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2