PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01094.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 602aa    MW: 66318.6 Da    PI: 5.1245
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01094.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.68.5e-962366012374
                     GRAS   2 velLlecAeavssgdle......laqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                              +e+L+++Ae + +++++      laq +Larl+++ s +    p+qR+a+++te L + +++         +    s++n + ++a
  Rsa1.0_01094.1_g00004.1 236 IEQLFNAAELIGNNNNNngdhtvLAQGILARLNHHLSYNNknPPFQRAASHITESLLSLINN--------ASQPLISPENLILRIA 313
                              689999***999987776777789***********665552269*****************9........22222334579***** PP

                     GRAS  80 alklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeele 159
                              a+++fse+sP+l+f ++taNq Ile+ + e   +r+HiiDfd+++G+QW +L+q+LasR+ + + sl++T++++p s+  ++ el+
  Rsa1.0_01094.1_g00004.1 314 AYRTFSETSPFLQFVNFTANQSILESCNDElgfDRIHIIDFDVGYGGQWSSLMQELASRRrNRASSLKLTVFAPPPSTvsDEFELR 399
                              ****************************99999************************99857778*********9988899***** PP

                     GRAS 160 etgerLakfAeelgvpfefnvlvakrledlele..eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                               t+e+L++fA e+++pfe+++l  + l +  ++  +Lr +++Ea+aVnl ++             + + +L+++k++sP+vvv+++
  Rsa1.0_01094.1_g00004.1 400 FTEENLRSFAGEVKIPFEIELLSLELLLNPAYWpvTLRSSEKEAVAVNLPVNSVVSG--------YLPLILRFIKQISPNVVVCSD 477
                              *********************96666666666611566666*********9655554........5677***************** PP

                     GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                              + +d+n+++F + +++al+y+++l++sl+a+   +s+e+ +vEr++++++i++++++++++     e+   Wr+ + ++GF+pv l
  Rsa1.0_01094.1_g00004.1 478 RGCDRNDAPFPNAVIHALQYHATLLESLDAS---QSHEDESVERFWVQPSIEKLLMKRHRW----IERSPPWRSLFAQCGFSPVGL 556
                              *****************************99...89*************************....89999**************** PP

                     GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              s++a++qa++ll++ +++g++ve+++gslv++W++++Lv+vSaW+
  Rsa1.0_01094.1_g00004.1 557 SQTAEAQAECLLQRSPVRGFHVEKRQGSLVMYWQRKELVTVSAWK 601
                              ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.366209581IPR005202Transcription factor GRAS
PfamPF035142.9E-93236601IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MPLSFERFQG EGAFGVVSSL CSDPQKIWFN QDKTGAGQDL GYVVGGVLPE PTSVLDALRS  60
PSPLASHSST TTTMTLSSSH GGGAVTTATT TAGDDKCSQM GLDDLDGGQE QSILRLIMDP  120
GSAFGVFDPG FGLGSGSVPV NENSNPLLSC SFPYQEELMF SNPPSSPPAK RFNPGSHQPV  180
YPFPDPDPGH DPFLVRRQQQ FQFPFQFQQQ QLPSSSSSLA PVPAPGIAGD DQTVIIEQLF  240
NAAELIGNNN NNNGDHTVLA QGILARLNHH LSYNNKNPPF QRAASHITES LLSLINNASQ  300
PLISPENLIL RIAAYRTFSE TSPFLQFVNF TANQSILESC NDELGFDRIH IIDFDVGYGG  360
QWSSLMQELA SRRRNRASSL KLTVFAPPPS TVSDEFELRF TEENLRSFAG EVKIPFEIEL  420
LSLELLLNPA YWPVTLRSSE KEAVAVNLPV NSVVSGYLPL ILRFIKQISP NVVVCSDRGC  480
DRNDAPFPNA VIHALQYHAT LLESLDASQS HEDESVERFW VQPSIEKLLM KRHRWIERSP  540
PWRSLFAQCG FSPVGLSQTA EAQAECLLQR SPVRGFHVEK RQGSLVMYWQ RKELVTVSAW  600
KC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2931560180375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01094.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894450.0AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444958.10.0PREDICTED: scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A078JM970.0A0A078JM97_BRANA; BnaCnng57010D protein
STRINGBo6g074360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]