PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01104.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 258aa    MW: 29428 Da    PI: 10.1431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01104.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.7e-157733099
                             ..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3 30 keesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                             +  s +++++ ++g sWev +  +k+++  y+ ++GW++Fv +n L +++fv+F+++g ++f   v ++rk
  Rsa1.0_01104.1_g00012.1  7 EDFSNKMVIRAQWGGSWEVDI--SKNPRFyYMEKSGWNQFVTDNALGANEFVTFTHKGLMCF--DVNIYRK 73
                             5567899**************..******566669********************9988999..8888876 PP
2B341.82e-13165244993
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                + +++l +pk+f ee+ +  ++s+  ++++++g  sWev +   +++ ++++++GW++ +++  L  gD ++F+l++ +ef  v
  Rsa1.0_01104.1_g00012.1 165 KKSYLKILGIPKNFYEEYIK--NGSMVYKIRHPEGeGSWEVLC--LGRKTQTIFSSGWSQLAREYPLSIGDRCTFRLIKPTEF--V 244
                              344456799*********64..4999******99889******..999999**************************987666..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.533174IPR003340B3 DNA binding domain
SMARTSM010193.0E-7174IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-14679IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-12773IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-14875IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-101072No hitNo description
Gene3DG3DSA:2.40.330.102.0E-15156251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.729157251IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-17157249IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-15160251IPR003340B3 DNA binding domain
PfamPF023621.1E-10161245IPR003340B3 DNA binding domain
CDDcd100176.20E-9167249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMNVSKEDFS NKMVIRAQWG GSWEVDISKN PRFYYMEKSG WNQFVTDNAL GANEFVTFTH  60
KGLMCFDVNI YRKNGKEILV PQKPHTTTPF SGIKKEEGER SYKDVKNEDE SMGGGVELAA  120
EAKTAKTKKN AVEIGESSRG AALRNKKAEK IKKKKAVPKF KITIKKSYLK ILGIPKNFYE  180
EYIKNGSMVY KIRHPEGEGS WEVLCLGRKT QTIFSSGWSQ LAREYPLSIG DRCTFRLIKP  240
TEFVLTSRKA KEEIIVID
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01104.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893485e-69AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490059.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-88Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3N6Q5591e-122A0A3N6Q559_BRACR; Uncharacterized protein
STRINGBra001648.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.12e-80B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]