PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01134.1_g00010.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YB

Protein Properties

Length: 191aa MW: 20943.2 Da PI: 6.5211

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01134.1_g00010.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	183.5	1.7e-57	34	131	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 vreqdrflPian+srimk+ lPan+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa++tlGfe+yveplk y Rsa1.0_01134.1_g00010.1 34 VREQDRFLPIANISRIMKRGLPANGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKFY 119 69********************************************************************************** PP NF-YB 87 lkkyrelegekk 98 l++yre+eg++k Rsa1.0_01134.1_g00010.1 120 LTRYREMEGDNK 131 *******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-54	30	146	IPR009072	Histone-fold
SuperFamily	SSF47113	1.38E-40	37	140	IPR009072	Histone-fold
Pfam	PF00808	7.4E-28	40	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.1E-21	68	86	No hit	No description
PROSITE pattern	PS00685	0	71	87	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.1E-21	87	105	No hit	No description
PRINTS	PR00615	5.1E-21	106	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MADSQAKSSG MSPGVGGGGS HESGGDQSPR SMNVREQDRF LPIANISRIM KRGLPANGKI 60 AKDAKETMQE CVSEFISFVT SEASDKCQRE KRKTINGDDL LWAMTTLGFE EYVEPLKFYL 120 TRYREMEGDN KGSGKGGESS AKRDGQPSQF PVFTLSEQFL QHGQQQGSFS QGHYGNSQGS 180 SHMMVQMPNA E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-48	34	125	1	92	Transcription factor HapC (Eurofung)
4g92_B	3e-48	34	125	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01134.1_g00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018493235.1	1e-114	PREDICTED: nuclear transcription factor Y subunit B-10
Swissprot	Q67XJ2	2e-94	NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBL	A0A3P5Y537	1e-97	A0A3P5Y537_BRACM; Uncharacterized protein (Fragment)
STRING	XP_006403703.1	1e-96	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	1e-78	nuclear factor Y, subunit B10

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]