PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01151.1_g00011.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

YABBY

Protein Properties

Length: 142aa MW: 16031.1 Da PI: 10.9052

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01151.1_g00011.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	145.2	6.9e-45	5	118	63	170
YABBY 63 ldeslkeelleelkveeenlksnvekeesastsvssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrika 142 l++s ++++++l++ +++++s v+++e s+s+ss++ sen d+e+pr+pp + PekrqrvPsaynrfikeeiqrika Rsa1.0_01151.1_g00011.1 5 LHQSSPPPIHQDLQQPKQHITSSVTRKEWGSSSRSSNHYsttlSENVDREAPRMPPirLMAAPEKRQRVPSAYNRFIKEEIQRIKA 90 556777889********9999999887766666655444449*******9556789******************** PP YABBY 143 snPdishreafsaaaknWahfPkihfgl 170 +nP ishreafs+aaknWahfP+ihfgl Rsa1.0_01151.1_g00011.1 91 GNPAISHREAFSTAAKNWAHFPHIHFGL 118 ************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.6E-40	11	118	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-7	62	111	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	65	112	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MGVSLHQSSP PPIHQDLQQP KQHITSSVTR KEWGSSSRSS NHYSTTLSEN VDREAPRMPP 60 IRLMAAPEKR QRVPSAYNRF IKEEIQRIKA GNPAISHREA FSTAAKNWAH FPHIHFGLKL 120 DGNKKGKQLD QTVAGHKSNG YF

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01151.1_g00011.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	1e-157	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490561.1	1e-103	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	8e-79	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A078GBE0	2e-90	A0A078GBE0_BRANA; BnaC08g43150D protein
STRING	Bra031629.1-P	1e-88	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-74	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]