PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01185.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 268aa MW: 30791.7 Da PI: 7.4311

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01185.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.5	2.5e-27	5	136	6	127
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 F+P ++el+++yL++k+++++ + + i+ev+i+++eP dLp +k e++ wyf s+ +k + +r++ra k+g Wk tg++ Rsa1.0_01185.1_g00006.1 5 TFNPPEDELINYYLNNKITENDDPQGKQINEVNICHHEPADLPGLAKIESShTWYFISPVEK-FGKLNRRKRASKTGHWKITGNSC 89 7*******************999889***********6444444426777777665.56789999*********** PP NAM 91 evlskkgelvglkktLvfy..........kgrapkgektdWvmheyr 127 ++++++g+ vglkk Lvf ++ + +k +W++he++ Rsa1.0_01185.1_g00006.1 90 TIKDTDGNPVGLKKFLVFQenknrrsttlLSTTTQQHKFTWIIHEFH 136 ***************443333322213444455999****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.714	1	155	IPR003441	NAC domain
Pfam	PF02365	1.1E-16	4	136	IPR003441	NAC domain
SuperFamily	SSF101941	8.24E-33	4	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MNRYTFNPPE DELINYYLNN KITENDDPQG KQINEVNICH HEPADLPGLA KIESSHTWYF 60 ISPVEKFGKL NRRKRASKTG HWKITGNSCT IKDTDGNPVG LKKFLVFQEN KNRRSTTLLS 120 TTTQQHKFTW IIHEFHSFLH HPNKDAFVLC KLKKKTRSLR GVAVDASPAV IDLSPTIIAD 180 PMLNHPQMLT HNKDPVEDYG GDYCNDLEEL IPEIDSCRWL DHSYQFDNNH WGSFADTTHV 240 RTKIILLNEN SSVTTKDPTS SRGIFMIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-12	4	158	21	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-12	4	158	21	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-12	4	158	21	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-12	4	158	21	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-12	4	158	24	171	NAC domain-containing protein 19
3swm_B	1e-12	4	158	24	171	NAC domain-containing protein 19
3swm_C	1e-12	4	158	24	171	NAC domain-containing protein 19
3swm_D	1e-12	4	158	24	171	NAC domain-containing protein 19
3swp_A	1e-12	4	158	24	171	NAC domain-containing protein 19
3swp_B	1e-12	4	158	24	171	NAC domain-containing protein 19
3swp_C	1e-12	4	158	24	171	NAC domain-containing protein 19
3swp_D	1e-12	4	158	24	171	NAC domain-containing protein 19
4dul_A	1e-12	4	158	21	168	NAC domain-containing protein 19
4dul_B	1e-12	4	158	21	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01185.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018511051.1	1e-174	PREDICTED: NAC domain-containing protein 62 isoform X2
TrEMBL	A0A078FQS7	1e-164	A0A078FQS7_BRANA; BnaC05g00960D protein
TrEMBL	A0A3P6F248	1e-164	A0A3P6F248_BRAOL; Uncharacterized protein
STRING	Bo5g002870.1	1e-164	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14815	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04430.1	2e-80	NAC domain containing protein 49