PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01228.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 345aa MW: 39151.7 Da PI: 7.0208

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01228.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.9	7.3e-38	82	226	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 a+kkdrhskihT++g+RdRRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ + i el++ + +++ ++ + ++ Rsa1.0_01228.1_g00007.1 82 AVKKDRHSKIHTAQGLRDRRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRDIEELVQEKKLYNNDEdfGNNGGNLEK--- 164 89**************************************************************4444422222111111111... PP TCP 86 ssg......................kaaksaakskksqksaasalnlakesrakarararertre 128 + + k+ +++++++ ++ ++ k sr kar +a+e+ re Rsa1.0_01228.1_g00007.1 165 --DddvgdtsfvygscsdcfeeevvCKVKKP-EKRNKKTGLSNISSSTKRSRTKARGKAKEKARE 226 ..12333455666777777776543222222.333333334446666668888888888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-36	83	226	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.753	84	142	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSSSNNNYNN GSNSAVFPLS LYLSSLSGHQ GIPYNHQSSA SPGQMVSAVP ESLINYMPFS 60 SNSAMNQQGL DIPEVSREIK KAVKKDRHSK IHTAQGLRDR RVRLSIGISR QFFDLQDMLG 120 FDKASKTLDW LLKKSRRDIE ELVQEKKLYN NDEDFGNNGG NLEKDDDVGD TSFVYGSCSD 180 CFEEEVVCKV KKPEKRNKKT GLSNISSSTK RSRTKARGKA KEKAREIISD HPETASKIIQ 240 TEIMDPFKRS INFNGGEDMT DFFYKESIQE SANQECITKI QVNLPMNMDQ SYNQQYPEFM 300 LKDQGSSSNY YAILPQNLDF DYNPNPFIDQ LYCGVTNTNF FRGFP

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSSSNNNYNN GSNSAVFPLS LYLSSLSGHQ GIPYNHQSSA SPGQMVSAVP ESLINYMPFS  60
SNSAMNQQGL DIPEVSREIK KAVKKDRHSK IHTAQGLRDR RVRLSIGISR QFFDLQDMLG  120
FDKASKTLDW LLKKSRRDIE ELVQEKKLYN NDEDFGNNGG NLEKDDDVGD TSFVYGSCSD  180
CFEEEVVCKV KKPEKRNKKT GLSNISSSTK RSRTKARGKA KEKAREIISD HPETASKIIQ  240
TEIMDPFKRS INFNGGEDMT DFFYKESIQE SANQECITKI QVNLPMNMDQ SYNQQYPEFM  300
LKDQGSSSNY YAILPQNLDF DYNPNPFIDQ LYCGVTNTNF FRGFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-14	89	142	1	54	Putative transcription factor PCF6
5zkt_B	3e-14	89	142	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01228.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189200	1e-143	AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444521.1	0.0	PREDICTED: transcription factor TCP1-like isoform X1
Refseq	XP_018444522.1	0.0	PREDICTED: transcription factor TCP1-like isoform X1
Swissprot	Q9FYG7	1e-136	TCP1_ARATH; Transcription factor TCP1
TrEMBL	A0A397YTL1	1e-180	A0A397YTL1_BRACM; Uncharacterized protein
STRING	Bra004097.1-P	1e-177	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-117	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]