PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01228.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 1191aa    MW: 132489 Da    PI: 5.5963
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01228.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.97.9e-532023173117
                     CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 
                              +e k+rwlk+ e++ iL+n+e++elt++++++p+sgsl L+n++++++frkDG++w+kk+dg+++ E+he+LKvg+ve+l+cyYah
  Rsa1.0_01228.1_g00008.1 202 QEaKTRWLKPPEVYFILKNHERYELTHKAPHKPTSGSLYLFNKRVLKFFRKDGHQWRKKRDGRAIAEAHERLKVGNVEALNCYYAH 287
                              6669********************************************************************************** PP

                     CG-1  88 seenptfqrrcywlLeeelekivlvhylev 117
                              +e++p+fqrr++w+L+ e+++ivlvhy++v
  Rsa1.0_01228.1_g00008.1 288 GEHDPSFQRRIFWMLDLEYDHIVLVHYRDV 317
                              ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd062221.52E-950136No hitNo description
PfamPF134562.2E-750125No hitNo description
PROSITE profilePS5143773.659197323IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-70200318IPR005559CG-1 DNA-binding domain
PfamPF038595.3E-45203317IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.36E-17651735IPR014756Immunoglobulin E-set
CDDcd001021.58E-6651735No hitNo description
Gene3DG3DSA:2.60.40.101.3E-8651739IPR013783Immunoglobulin-like fold
PfamPF018331.1E-9651734IPR002909IPT domain
Gene3DG3DSA:1.25.40.202.7E-15825923IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.08E-16828922IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.963828920IPR020683Ankyrin repeat-containing domain
CDDcd002043.74E-13848920No hitNo description
PfamPF127963.6E-7849921IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.446861893IPR002110Ankyrin repeat
SMARTSM002480.0057861890IPR002110Ankyrin repeat
SMARTSM002483100900929IPR002110Ankyrin repeat
SMARTSM0001543974996IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-119741073IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.7669751003IPR000048IQ motif, EF-hand binding site
SMARTSM000150.5110211043IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.26110221048IPR000048IQ motif, EF-hand binding site
PfamPF006120.005210231042IPR000048IQ motif, EF-hand binding site
SMARTSM000152.0E-410441066IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.55310451069IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-510471066IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1191 aa     Download sequence    Send to blast
MDTLRHATLE AECWRTANEK EDEEGEHDGT HSSEVETVPP WIPRIPTCRI DASWIDNGSV  60
SGLGWNFKDQ MGFVSFGQKA CSRSLSALHA EMEGLLWAAS CMRNMRITTI SFETDCTDLV  120
DMITNPGEWP AFATEIGIFQ GLHEYFEDHP SSCRGCCRKP PLAVSKQSWS EQPKNRDQVG  180
LINNPLNSLC NPVKYEISTL SQEAKTRWLK PPEVYFILKN HERYELTHKA PHKPTSGSLY  240
LFNKRVLKFF RKDGHQWRKK RDGRAIAEAH ERLKVGNVEA LNCYYAHGEH DPSFQRRIFW  300
MLDLEYDHIV LVHYRDVSDG NEGRQSSGTV LQFSLNPTTL FSSPSYNHHH HIGESSTDIQ  360
QQQQSSTSLG IAEANSGVVY NSSNSGGEEG SGSSYEIENR EAFRRLEEQL SLDDDILVNA  420
TDPLESLDGL DLLDFSTDTD HRVPPATVHQ RPESSSKLGR CCAGYVGPQY DNVVPPPPLY  480
SQNESLDSLL SLEYVKDMSH LAQPAAGHQR PESNRLDRSN GGYFGVEYHH PNSLMLVNND  540
SGGSGGSGDQ KFDSWKDVLE TCGASTALNS EGSTPSPAKG LLPGMQGDSN WTYSNQLDQS  600
MSSALPQELG SSFQLPACYS ELGAPETRMM NEEGQTEQEM NHTVAYKQKF TIEDISPEWG  660
YANETTKVII IGSFLCDPTE STWACMFGND EVPFEIIKEG VIRCQAPPCG PGKVNLCITC  720
GDGLSCSQIK EFEYRHKPDD TSIPRSSPDE LSLLVEFVQT LLSDRKTNLE PSTDDEWSRL  780
IRDGTATSST STVVDWLLQE LLKDKLDAWL SSRSQDKDQA SCCSLSKQEQ GIIHMVAGLG  840
FDWALSPILG HGVNVDFRDS KGWSALHWAA QLGSEKMVSA LIASGASPGA VTDPNTQDPI  900
GKTPASIAAS NGHKGLAGYL SEVALTNHLS SLTLEETEDS KDAAQAKAER KVNSITGRGH  960
PVNNDPQSLA ALKNAAQAAE RIQAAFRAHS FRKRQQREAA RHTFWKEYGI YADMSSPNAR  1020
NYHSAALSIQ KKYRGYKGRK EFLTKREKAV IIQAHVRGYQ TRKQYKVICW AVGVLDKVIL  1080
RWKRKGVGLK GFRQDVESGE ESEDEDILRV FRKQKVDGAV NEAFSRVLSM TRSQESRQQY  1140
HRVLTGYCKK KAELGKTETL GTGGSGGGYE EDDDALYDIA DMEYDNLFAL P
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01228.1_g00008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446387.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A397YZ200.0A0A397YZ20_BRACM; Uncharacterized protein
STRINGBo6g099030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]