PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01233.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 386aa    MW: 43100.6 Da    PI: 6.8553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01233.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-115682127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ++++ C+++ rtG C++G++C+F+H++
  Rsa1.0_01233.1_g00009.1 56 PGEPDCSYYIRTGLCRFGSTCRFNHPR 82
                             5789*********************96 PP
2zf-CCCH37.63.6e-12103127327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C ++++tGtCk+G +CkF+H++
  Rsa1.0_01233.1_g00009.1 103 QPECEYYLKTGTCKFGVTCKFHHPR 127
                              799********************96 PP
3zf-CCCH37.92.9e-12149173327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C +f+rtG+Ck+G++CkF+H++
  Rsa1.0_01233.1_g00009.1 149 EVDCAYFLRTGHCKFGATCKFNHPQ 173
                              578********************97 PP
4zf-CCCH37.25.1e-12279305127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+f+++tG Ck+G  CkF+H++
  Rsa1.0_01233.1_g00009.1 279 PGQPECQFYMKTGDCKFGTVCKFHHPR 305
                              5789*********************96 PP
5zf-CCCH38.42.1e-12325351127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++lC f++r+G+Ck+G++CkF+H++
  Rsa1.0_01233.1_g00009.1 325 PGEPLCVFYSRYGICKFGPSCKFHHPM 351
                              589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.0E-55582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6995583IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-85782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-66083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-46182IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108100128IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6104129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4106127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99146174IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6146173IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10149173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6149175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4152172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22278306IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5278305IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6282307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4284306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896324352IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7324351IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9326351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLNVCGIDMD QPSYDEENTP SKKTVDADTN ADIEAMWQMN LSSDETMETG SYPERPGEPD  60
CSYYIRTGLC RFGSTCRFNH PRDRELVITT ARMRGEYPER IGQPECEYYL KTGTCKFGVT  120
CKFHHPRNKA GIAGRVSLNM LGYPLRSNEV DCAYFLRTGH CKFGATCKFN HPQPQPTTTN  180
LMVPPTSGQQ QSYPWSRASF IASPRWQDPS GFTPLLMPQG VVPVQGWNPY SGQLGSPSGT  240
GNVHSNYRNL QLQNEPGSSV QLVGGIYALP RESVFPERPG QPECQFYMKT GDCKFGTVCK  300
FHHPRDRQPP PPDCLLSPIG LPLRPGEPLC VFYSRYGICK FGPSCKFHHP MGVFAHENTA  360
SGTDEVVETS GDIPEESQCL KQDKLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01233.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440407.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A397ZJV60.0A0A397ZJV6_BRACM; Uncharacterized protein
STRINGBra040604.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]