PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01251.1_g00012.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 218aa MW: 24831 Da PI: 10.1361

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01251.1_g00012.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.4	4.8e-17	82	171	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k +++s+v+ +l lp++f+ +h+ + + ++tl de+ + k+ +k++ l++GW++F+ +++L +gD vvF+l++ Rsa1.0_01251.1_g00012.1 82 FIKPMLQSHVTGGFWLGLPRHFCHTHMPQ--QVEMITLVDENDDESVTKYLADKNG----LSGGWRGFAIDHQLVDGDAVVFHLIN 161 89*******************999755..4458****9999999777777....***********************9 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 r++f +v ++r Rsa1.0_01251.1_g00012.1 162 RTTF--KVYIIR 171 8888..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.4E-20	73	171	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.79E-23	75	171	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.38E-26	80	171	No hit	No description
Pfam	PF02362	9.3E-15	82	171	IPR003340	B3 DNA binding domain
SMART	SM01019	4.3E-20	82	173	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.673	82	173	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MQAKPRTPRT PVNSSEVRRS SRAKNPPPSY REFGIEPLEK PRRSYQRRDL LNRVYASDDA 60 RVYAIHRAED LQSSLDPQFP SFIKPMLQSH VTGGFWLGLP RHFCHTHMPQ QVEMITLVDE 120 NDDESVTKYL ADKNGLSGGW RGFAIDHQLV DGDAVVFHLI NRTTFKVYII RVYDDTNNGS 180 DGSNDKALVI KSIKNQAENV SEAPPLSNSG KRKRRGRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01251.1_g00012.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189312	2e-77	AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454609.1	1e-161	PREDICTED: B3 domain-containing protein At3g19184 isoform X2
Swissprot	Q1G3M3	1e-101	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A397YT92	1e-135	A0A397YT92_BRACM; Uncharacterized protein
STRING	Bo6g124000.1	1e-135	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-91	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]