PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01262.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 326aa    MW: 37078.2 Da    PI: 7.4059
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01262.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05170189120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++Cp+C k+F+r  n++ H+
  Rsa1.0_01262.1_g00004.1 170 FSCPICFKTFNRYNNMQMHM 189
                              89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.619170197IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-6170189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576675.04E-5236274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSNPAYSNLL NNGFDNTNFN SSTSRSYIYN SHNCFYYPNT TNPNYMAPTT STFPNSPPLR  60
EALPLLSLSP IRHQEQQDQH YFMDTDQISS SKFLSYPHDV TVDLHLGLPN CGVGGSYIAP  120
DATTDEQDDD QGVEVTVDFH LHDDDDGYLH RGHHYWIPTP DQILMGPTQF SCPICFKTFN  180
RYNNMQMHMW GHGSQYRKGP ESLKGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT  240
LQTHYKRKHG SRPFACRRCG KAIAVKGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHVKA  300
FGNGHVPCGI DSFGGDHEDN YDASCY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01262.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589024.10.0PREDICTED: zinc finger protein WIP5
RefseqXP_013739635.10.0zinc finger protein WIP5
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A078GBV90.0A0A078GBV9_BRANA; BnaA06g02430D protein
STRINGBo6g025920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]