PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01263.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 165aa    MW: 18507 Da    PI: 5.3041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01263.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-052371755
                             HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                              + ++eL +llP++   + + l   + L +A  YIk+Lq
  Rsa1.0_01263.1_g00002.1  2 EDLYSELNSLLPQS---SREPLPLPDQLDEAASYIKELQ 37
                             5889*********9...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.03E-5152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.772136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEDLYSELNS LLPQSSREPL PLPDQLDEAA SYIKELQVSV EKKRERKRKL VTTAALDKLN  60
STGCSSMSSS IDVSVPRRLP RIEIQETGSI LHISLVTNLE HKFMFHEIVR VLTEELGAEI  120
THAGYSIVND AVFHTFDCRV EDCDFGATTT SRISESLKKL VNSVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14049EKKRERKRKL
24249KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01263.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448489.11e-118PREDICTED: transcription factor bHLH94, partial
SwissprotF4JIJ76e-72BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A3P6BVJ99e-91A0A3P6BVJ9_BRAOL; Uncharacterized protein (Fragment)
STRINGBo3g162840.11e-88(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-66bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]