PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01263.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 75aa    MW: 8799.17 Da    PI: 10.4643
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01263.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof87.71e-272174561
                   zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                              + cprC+s+ntkfCyy n   sqPry Ck+C r+Wt+G  +rn+P+G+++rk k++
  Rsa1.0_01263.1_g00004.1 21 PRICPRCNSDNTKFCYYYN---SQPRYICKNCLRFWTHGKGIRNIPIGASSRKTKRT 74
                             567*************977...8******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-171973IPR003851Zinc finger, Dof-type
PROSITE profilePS5088420.8682273IPR003851Zinc finger, Dof-type
PfamPF027014.0E-232373IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MNTPHVFVSA KHQVNEEKPP PRICPRCNSD NTKFCYYYNS QPRYICKNCL RFWTHGKGIR  60
NIPIGASSRK TKRTI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01263.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413832.12e-33dof zinc finger protein DOF4.4
SwissprotQ9SUA92e-26DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A078CGR71e-38A0A078CGR7_BRANA; BnaC03g64450D protein
TrEMBLA0A397YA531e-38A0A397YA53_BRACM; Uncharacterized protein
TrEMBLA0A3P6BKN81e-38A0A3P6BKN8_BRAOL; Uncharacterized protein
TrEMBLM4DWI61e-38M4DWI6_BRARP; Uncharacterized protein
STRINGBra020880.1-P2e-39(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2151225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.19e-29Dof-type zinc finger domain-containing protein