PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01285.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 265aa MW: 29175.2 Da PI: 6.6449

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01285.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51	2.5e-16	31	91	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ Rsa1.0_01285.1_g00001.1 31 RSRWSPKPEQILILESIFNSgMVNPPKEETVRIRKMLekfgKVGDANVFYWFQNRRSRSRR 91 89***************99***********************************997 PP
2	Wus_type_Homeobox	108.6	3.8e-35	30	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++Gk++d+NVfyWFQNr++R+r++q Rsa1.0_01285.1_g00001.1 30 VRSRWSPKPEQILILESIFNSGMVNPPKEETVRIRKMLEKFGKVGDANVFYWFQNRRSRSRRRQ 93 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.45E-14	23	98	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-9	24	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.661	27	92	IPR001356	Homeobox domain
SMART	SM00389	2.6E-6	29	96	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-14	31	91	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDKEQKPHST TGHSHSPSSS ASGSTSNETV RSRWSPKPEQ ILILESIFNS GMVNPPKEET 60 VRIRKMLEKF GKVGDANVFY WFQNRRSRSR RRQRQLQAAA AEAATVTNTC DQTMMVSNNL 120 PEHSGSDLGF GGCSTSNYLF ASSSYGAGCD DHSNNGMENL LTMSGQMGYH EANQHHYNYH 180 SSNVESILCP SDQSSNYHYQ QGSIMVFING VPTEVTSGGI DMKATFGEDS VLVNSSGVSL 240 PTDQFGFLMH SLQHGEAYFL VPRPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01285.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY251402	0.0	AY251402.1 Arabidopsis thaliana WOX11 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130381.1	1e-153	PREDICTED: WUSCHEL-related homeobox 11-like
Swissprot	Q6X7J3	1e-148	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A397ZML4	1e-154	A0A397ZML4_BRACM; Uncharacterized protein
STRING	Bo5g148780.1	1e-152	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-135	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]