PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01291.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 354aa    MW: 41024.2 Da    PI: 8.8091
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01291.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB65.51.1e-20771452494
                    NF-YB  24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                              n k+ k++ +t++   s  +s + s asdkcq+ek kt+ng+d lwa++tl fe+y+eplk+yl++yre++
  Rsa1.0_01291.1_g00001.1  77 NKKMEKQTLNTIHATKS-LMSQI-SRASDKCQKEKWKTVNGEDKLWAMSTLDFENYLEPLKLYLARYREVD 145
                              56677777777765443.56666.67*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.3E-1198145IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.0E-1699146IPR009072Histone-fold
PRINTSPR006151.2E-7105123No hitNo description
PRINTSPR006151.2E-7124142No hitNo description
PROSITE profilePS514198.827193354No hitNo description
PfamPF000713.5E-8212291IPR001806Small GTPase superfamily
SMARTSM001750.0037212315No hitNo description
Gene3DG3DSA:3.40.50.3001.7E-10218291IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525409.52E-10221291IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005525Molecular FunctionGTP binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MPEYEVNQRT REETESLERQ SMPWKPFVNT CRFSLLANDC NFIHSLSLEA AEGQRREELK  60
RERDRSIPST MADLGRNKKM EKQTLNTIHA TKSLMSQISR ASDKCQKEKW KTVNGEDKLW  120
AMSTLDFENY LEPLKLYLAR YREVDKVYVL LNVNAVSLQW CDAFKQKQKA SQQNIYFEKT  180
RILMQGVTAN KISTQLSPRS STIFGLLPLF TKKQLLLHLE SDDSAQLAHA TIGIDFLSKT  240
MYLEDMTLCF QLCHKDTAGH ERFRSLILSY IRDFSVAVIV NDAASKAYVE KNQMDQQKLS  300
LHIDFARMVC KFSSVMPSFL NTSMLIEDVR TERAKITLKS VVFGGLRHRL EEMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2e9s_A1e-1721233415105Ras-related protein Rab-6B
2e9s_B1e-1721233415105Ras-related protein Rab-6B
2e9s_C1e-1721233415105Ras-related protein Rab-6B
2fe4_A1e-1721233415105Ras-related protein Rab-6B
2ffq_A1e-1721233415105Ras-related protein Rab-6B
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01291.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3737722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.71e-23nuclear factor Y, subunit B1