PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01295.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 477aa    MW: 54121.1 Da    PI: 6.309
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01295.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3390.42.5e-119613101258
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                              ++lkkrmwkd++l+++lk++k+++   k++ ++    +++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g
  Rsa1.0_01295.1_g00003.1  61 DDLKKRMWKDRNLMEKLKQKKRDN---KDV-VSL--ASHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITG 140
                              79********************84...555.444..4589********************************************** PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS
                     EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172
                              +sdsLr+WWke v+fd+++p+a+++y    l+++ ++  + e+ss  h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPW
  Rsa1.0_01295.1_g00003.1 141 SSDSLRRWWKETVQFDQTAPNAVTDY--LTLAAAAAELIEKEPSSLLHMLQELQDTTLGSLLSALMQHCVPPQRRFPLEKGIAPPW 224
                              **************************..345555555667799******************************************* PP

                              ---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S- CS
                     EIN3 173 WPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekeca 258
                              WPtG+elwwge+g+++++g+ppy+kphdl+k wkvsvL+avikhmsp++ ++r+l+r sk+lqdkm+ake++++++vl+qee++++
  Rsa1.0_01295.1_g00003.1 225 WPTGTELWWGEQGAAHEHGAPPYRKPHDLRKSWKVSVLAAVIKHMSPDLGRVRRLARHSKCLQDKMMAKETDTWSRVLSQEEALLN 310
                              **********************************************************************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.8E-11761306No hitNo description
Gene3DG3DSA:1.10.3180.102.5E-67182310IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.27E-58185309IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MISNLGKLTT DRRMGWGPRA ERAGVGGPLA VGGRGVTKMV EVEELELLSP AEEEEEDISY  60
DDLKKRMWKD RNLMEKLKQK KRDNKDVVSL ASHRAEASRR KKMARSQDSV LKYMMKIMEV  120
CKAKGFVYGI VPEKGKPITG SSDSLRRWWK ETVQFDQTAP NAVTDYLTLA AAAAELIEKE  180
PSSLLHMLQE LQDTTLGSLL SALMQHCVPP QRRFPLEKGI APPWWPTGTE LWWGEQGAAH  240
EHGAPPYRKP HDLRKSWKVS VLAAVIKHMS PDLGRVRRLA RHSKCLQDKM MAKETDTWSR  300
VLSQEEALLN IKDLNISEDQ EASGSKTTKR KGDFMEPSNR VYTCQNSSCP KSDASFGFID  360
KKSRTGHEIQ CLNRSATQEP GQIAGDMISM LVTSTNTTSE DDYSVSSRGD DSHWMDYLWF  420
ERMQHEFNSS RSFDEDDDTA IVLNQSPESN QSDNVCQSTF SVWDMGCEDK DIYMFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-571863084126Protein ETHYLENE INSENSITIVE 3
4zds_B1e-571863084126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179101KKRDNKDVVSLASHRAEASRRKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01295.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553420.0AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475587.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A078HTL30.0A0A078HTL3_BRANA; BnaC02g00520D protein
TrEMBLA0A0D3AID80.0A0A0D3AID8_BRAOL; Uncharacterized protein
STRINGBo2g009710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]