PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01300.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 286aa    MW: 32582 Da    PI: 7.6327
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01300.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP757.5e-2452134371
                  E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                              + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwk
  Rsa1.0_01300.1_g00001.1  52 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnaekplneneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWK 133
                              6799999999...****9999********************************************************.*******9 PP

                  E2F_TDP  71 g 71 
                              g
  Rsa1.0_01300.1_g00001.1 134 G 134
                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.0E-956279IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.1E-3647138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-2850134IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.29E-1853135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.9E-2053134IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.14E-34141267No hitNo description
SMARTSM011389.1E-41141286IPR014889Transcription factor DP, C-terminal
CDDcd144583.22E-27141242IPR014889Transcription factor DP, C-terminal
PfamPF087811.7E-30142259IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEMDLFVTPE KQRDRPSVSL RKTPVRRKLI VDDDDDDNEI ASEKKGQSRT TGGGLRQFSV  60
MVCQKLEAKK ITTYKEVADE IISDFATIKQ NAEKPLNENE YNEKNIRRRV YDALNVFMAL  120
DIIARDKKEI RWKGLPITCK KDVEQVKRDR NKVMNSVQKK ASFLKELREK VSSLESLMLR  180
NQEMVVKTEG PAEGFTLPLI LLETNPHAVV EIEISEDMQL VHLDFNNTPF SVHDDAYILK  240
LMQEHKLQQN RASSSSSAHH QSQHSSSSSC IASGTSGPVY WNSGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2544136390PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01300.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472740.10.0PREDICTED: transcription factor-like protein DPA
RefseqXP_018472741.10.0PREDICTED: transcription factor-like protein DPA
RefseqXP_018472742.10.0PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY31e-178DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A078J1890.0A0A078J189_BRANA; BnaA03g54820D protein
STRINGBo3g001900.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-175Transcription factor DP