PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01307.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YC
Protein Properties Length: 129aa    MW: 14679.1 Da    PI: 10.6968
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01307.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.13e-168891797
                    NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                              + e+P++r+kki+k+d+d+++i +ea  l++ + elf+  l+ +s + a e+kr+t++   + +av+r + + +fl+d  p
  Rsa1.0_01307.1_g00003.1  8 IRPEFPITRVKKIMKVDKDINKINSEALHLVTYSTELFLRFLAEKSSVVAAEKKRKTVNLDHLRTAVKRHQpTREFLLDSLP 89
                             5678***************************************************************99764789****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.14E-171177IPR009072Histone-fold
PfamPF008083.6E-201174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.1E-201289IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAEEEETIRP EFPITRVKKI MKVDKDINKI NSEALHLVTY STELFLRFLA EKSSVVAAEK  60
KRKTVNLDHL RTAVKRHQPT REFLLDSLPL PSAQPVRVTK TVSDKKPPPV GTRRIDAFFS  120
KGKAKVDSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01307.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971401e-176KC797140.1 Brassica napus transcription factor subunit NF-YC13 (NF-YC13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480660.11e-87PREDICTED: nuclear transcription factor Y subunit C-5
TrEMBLA0A078H1V66e-82A0A078H1V6_BRANA; BnaC07g16980D protein
STRINGBo7g065250.13e-79(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-72nuclear factor Y, subunit C13