PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01308.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 645aa    MW: 73307.5 Da    PI: 8.3043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01308.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07464506140
                              TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                              +++W++eE + l ++  ++++g   +W+ I++++g+gR+ +++
  Rsa1.0_01308.1_g00008.1 464 KQPWSKEEIDMLRKGMIKYPKGtsrRWEVISEYIGTGRSVEEI 506
                              79************************************99876 PP
2Myb_DNA-binding26.91.1e-08588631445
                              S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                              W++  +  lv+a k ++++   +W+++a+ ++ gRt  qck ++ 
  Rsa1.0_01308.1_g00008.1 588 WSAVQERALVQALKTFPKEtsqRWERVAAAVP-GRTVVQCKKKFA 631
                              ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.6E-2197201IPR001623DnaJ domain
SuperFamilySSF465654.71E-2198179IPR001623DnaJ domain
SMARTSM002712.6E-19100175IPR001623DnaJ domain
PROSITE profilePS5007618.592101183IPR001623DnaJ domain
CDDcd062571.26E-12101172IPR001623DnaJ domain
PfamPF002261.3E-17101180IPR001623DnaJ domain
PRINTSPR006253.9E-9106124IPR001623DnaJ domain
PRINTSPR006253.9E-9124139IPR001623DnaJ domain
PRINTSPR006253.9E-9155175IPR001623DnaJ domain
PROSITE patternPS006360160179IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.249459514IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-5463506IPR009057Homeodomain-like
SMARTSM007179.3E-7463516IPR001005SANT/Myb domain
PfamPF002493.9E-6464506IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-7464508IPR009057Homeodomain-like
CDDcd001671.88E-4466506No hitNo description
PROSITE profilePS500907.166580634IPR017877Myb-like domain
SMARTSM007171.6E-8584636IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-9586633IPR009057Homeodomain-like
CDDcd001671.58E-6588634No hitNo description
Gene3DG3DSA:1.10.10.601.5E-5588632IPR009057Homeodomain-like
PfamPF002494.3E-7588632IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MPSLRSESTV VKLITYSEEL VDGKPLYASS NSLPVKALNR EPAGHAFHSA ALKLHGCAEE  60
EPTDSEGDDK KAGDDKEKEY VPSFNSYSNK GKKKSGTQQQ DHYALLGLSN LRYLATEDQI  120
RKSYREAALK HHPDKMASLL LAEETEEAKE AKKEEIESRF KAIQEAYEVL MDPLKRRIFD  180
STDEFDDEVP TDCAPQDFFK VFGPAFKRNA RWSVNQRIPT DLGDENTKLK EVDRFYNFWY  240
AFKSWREFPD EEEHDLEQAD SREERRWMEK ENARTTAKAR KEEHARIRTL VDNAYRKDPR  300
IVKRKEEEKA EKQQKKDAKL MAKKKQEEEA AVAAAEEKKR KEEEEKRAVE SAQQQKKAKE  360
KEKKLIRKER NRLRTLSAPV VAQRLLDISE EDIENLCMTL NLEQLQSVCD TMGNKEGMEL  420
AKVIKEGCSS SNSSRDQEAA NSKEKESEKT NGERVSVLES AQKKQPWSKE EIDMLRKGMI  480
KYPKGTSRRW EVISEYIGTG RSVEEILKAT KTVLLQKPDS AKAFDSFLEK RKPTATIASP  540
LSTREELGES LPATAKVKQP PSKEPVAGQS SDSNGEASGS SSETADGWSA VQERALVQAL  600
KTFPKETSQR WERVAAAVPG RTVVQCKKKF AELKEIIRSK KTGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-1419730120123Zuotin
5dje_B5e-1419730120123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322340KKKQEEEAAVAAAEEKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01308.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895470.0AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491635.10.0PREDICTED: dnaJ homolog subfamily C member 2
RefseqXP_018491636.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D3CL700.0A0A0D3CL70_BRAOL; Uncharacterized protein
STRINGBo5g136560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain