PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01310.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28617.5 Da    PI: 9.6111
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01310.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-29959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien   rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss
  Rsa1.0_01310.1_g00004.1  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59
                             79***********************************************96 PP
2K-box64.24.7e-2283163989
                    K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                              +++a++++ ++e++ Lk+ei++Lq+++ +l+G+ L++Lslk+Lq+LeqqL+ sl ++R++K++    + e+l+++ +el++
  Rsa1.0_01310.1_g00004.1  83 NCKAENQEESTEVDLLKDEISKLQEKHLQLKGKRLNTLSLKQLQHLEQQLNVSLISVRERKEQRAELENETLRRQVQELKS 163
                              688999***********************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.786161IPR002100Transcription factor, MADS-box
CDDcd002653.50E-42277No hitNo description
SuperFamilySSF554551.31E-31275IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014869.5E-1487162IPR002487Transcription factor, K-box
PROSITE profilePS5129711.13588176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSSS  60
RCMKKTLLRY GNYQIPSDVV GINCKAENQE ESTEVDLLKD EISKLQEKHL QLKGKRLNTL  120
SLKQLQHLEQ QLNVSLISVR ERKEQRAELE NETLRRQVQE LKSFLPSIKQ HYAPSYIRCF  180
AIDPKSSLLN NNTCYGHINC SLLQNTNSDT TLQLGLPGEA HDTRKNEGDR ESPSSDSVTT  240
STTRASAQRI SLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23189194MEF2C
5f28_B2e-23189194MEF2C
5f28_C2e-23189194MEF2C
5f28_D2e-23189194MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01310.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU226811e-117U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475144.11e-172PREDICTED: agamous-like MADS-box protein AGL15 isoform X3
SwissprotQ392951e-147AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A0D3B1011e-150A0A0D3B101_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AFE01e-150A0A3P6AFE0_BRAOL; Uncharacterized protein
STRINGBo3g009340.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-109AGAMOUS-like 15