PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01344.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 264aa    MW: 29736.2 Da    PI: 6.5303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01344.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-2194143255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Rsa1.0_01344.1_g00005.1  94 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 143
                              59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.53E-3493153No hitNo description
PROSITE profilePS5103223.16994151IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2394152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3294152IPR001471AP2/ERF domain
SMARTSM003801.5E-3694157IPR001471AP2/ERF domain
PRINTSPR003672.1E-1195106IPR001471AP2/ERF domain
PfamPF008471.5E-1495143IPR001471AP2/ERF domain
PRINTSPR003672.1E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATTMDYYNN KTFQQKTDPF GGELMEALLP FIKSPSTDSP ASAFASYPDV CLTQPIPYGS  60
YHLGSTQTHS FSNHLSPKPV TMKQTGSPPK PTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW  120
LGTFDTAEEA ALAYDKAAYK LRGDFARLNF PNLRGEFGEY QPLQSPVDDK LEAICQSLAE  180
TQKPAKKKKS RRSSTVTAGK QPEEVKPEDY SNVVSPPSTE SYGSPLSDLT FVDTEEEGEQ  240
TWNVNFALEK YPSYEIDWDS ILSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2193159470ATERF1
3gcc_A5e-2193159470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01344.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471284.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13
SwissprotQ9LM151e-110RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0D3CCD61e-158A0A0D3CCD6_BRAOL; Uncharacterized protein
STRINGBo5g037400.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.14e-99ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]