PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01355.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 453aa    MW: 50710.3 Da    PI: 6.8936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01355.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12300346455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Rsa1.0_01355.1_g00012.1 300 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 346
                              799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-4150233IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17296362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.16E-14299350No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16300362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10300346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGGGQKFWEN QEDRAMVEST IGTEACDFFI SSNTSKLLPP PPHPPTDPNL QQGLRHLVEG  60
SSDWDYAVFW LASNSNTSSS DGCVLIWGDG HYRPHKKTSE EAKKTEEEDE TKRLVLRKLH  120
SSFFLEDRRL LAKSAGGLTD LDVFYLASLY FYFRCDSSST KYGPAGTYVS GKALWASDLP  180
SCLSYYWVRS FLARSAGFKT VLSVPVSSGV VELGSLKLIP EDKSVIEMVK SVFGCGKEAP  240
KIFGRQLSLS INFSPKMEDD TTGGFSLDAY EVGCSNHLTD EQKPRKRGRK PANGREEALN  300
HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKMVMK  360
RRESSQITPG DVDYQQREDD AVVRVSCALE CHPVSKAIRM FRENEVTPHD TNVAVTEEGV  420
VHTFSIRPQG GCTAEELKDK ILASLSHSSV INM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-26294362270Transcription factor MYC2
5gnj_B4e-26294362270Transcription factor MYC2
5gnj_E4e-26294362270Transcription factor MYC2
5gnj_F4e-26294362270Transcription factor MYC2
5gnj_G4e-26294362270Transcription factor MYC2
5gnj_I4e-26294362270Transcription factor MYC2
5gnj_M4e-26294362270Transcription factor MYC2
5gnj_N4e-26294362270Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01355.1_g00012.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896321e-168AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484627.10.0PREDICTED: transcription factor bHLH3-like
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A398AAI30.0A0A398AAI3_BRACM; Uncharacterized protein
STRINGBo7g104400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]