PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01373.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 597aa    MW: 65655 Da    PI: 5.422
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01373.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.89.1e-902395952373
                     GRAS   2 velLlecAeavss.gdle..laqalLarlsel.aspdgd.....pmqRlaayfteALaarlarsvselykalppsetseknsseel 78 
                              +e+L+++Ae +++ gd++  laq +Larl+++ +++  +     p+qR+a+++ eAL +  a          +p   +++n + ++
  Rsa1.0_01373.1_g00003.1 239 IEQLFNAAELIATtGDHHtiLAQGILARLNHHlSTSFNNnnknpPFQRAASHISEALLSLGAP--------TQPLL-TPENLILRI 315
                              789*******99864444569**********96333333566779************998888........33333.34689**** PP

                     GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetg 162
                              aa+++fse+sP+l+f ++taNq Il+   g +r+HiiDfd+++G+QW +L+q+La  ++   sl++T++++p s+  ++ el+ t+
  Rsa1.0_01373.1_g00003.1 316 AAYRAFSETSPFLQFVNFTANQSILDL--GFDRIHIIDFDVGYGGQWSSLMQELARNRG--SSLKVTVFAPPPSTvsDEFELRFTE 397
                              **************************7..99************************7544..59********9988899******** PP

                     GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                              e+L++fA el++pfe ++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +
  Rsa1.0_01373.1_g00003.1 398 ENLRSFAGELKIPFEMELLSLELLLNPAYWPLSLRSseKEAVAVNLPISSVVP--------GYLPLILRFLKQISPNVVVCCDRGC 475
                              ******************98888888899999888777999999999944333........35667******************** PP

                     GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                              d+n+++F + +++al+y+++l++sl+a+   +s+e+++vEr++++++i++++++++++     e+   Wr+ ++++GF+p++ls++
  Rsa1.0_01373.1_g00003.1 476 DRNDAPFPNAVIHALQYHTTLLESLDAN---QSQEDSSVERFWVQPSIEKLLMKRHRW----IERSPPWRSLFTQCGFTPASLSQT 554
                              ****************************...8**************************....89999******************* PP

                     GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              a++qa++l+++ +++g++ve+++ slv++W++++LvsvSaW
  Rsa1.0_01373.1_g00003.1 555 AETQAECLMQRNPVRGFHVEKRQSSLVMCWQRKELVSVSAW 595
                              ***************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.862215576IPR005202Transcription factor GRAS
PfamPF035143.2E-87239595IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MPLSFEKFQG EGVFGVSSYY TDSHKIRFNQ NKTGTEEEED LGYVFRGGLQ EPTSVLDALR  60
SPSPLASHSS TTTNTTLSSS HGGGAVTATA IAGDDKCSQM GLDDLDGVLS ASSPSQEQSI  120
LRLIMDPGSG FGVLDPGFGF GSGSAPVTDG SNQLLPCSFP FHDQTQTHQI ANPEALFSNP  180
PPAKRFNSGS HQPVFPFSDP VQLYQFPVQF HQQRIPSSAA ALAPVPPPGI AVDDQSVIIE  240
QLFNAAELIA TTGDHHTILA QGILARLNHH LSTSFNNNNK NPPFQRAASH ISEALLSLGA  300
PTQPLLTPEN LILRIAAYRA FSETSPFLQF VNFTANQSIL DLGFDRIHII DFDVGYGGQW  360
SSLMQELARN RGSSLKVTVF APPPSTVSDE FELRFTEENL RSFAGELKIP FEMELLSLEL  420
LLNPAYWPLS LRSSEKEAVA VNLPISSVVP GYLPLILRFL KQISPNVVVC CDRGCDRNDA  480
PFPNAVIHAL QYHTTLLESL DANQSQEDSS VERFWVQPSI EKLLMKRHRW IERSPPWRSL  540
FTQCGFTPAS LSQTAETQAE CLMQRNPVRG FHVEKRQSSL VMCWQRKELV SVSAWNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2527859634375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01373.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476618.10.0PREDICTED: scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A0D3B6T50.0A0A0D3B6T5_BRAOL; Uncharacterized protein
STRINGBo3g037600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]