PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01377.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 313aa MW: 35621.5 Da PI: 4.6669

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01377.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.7	5.4e-12	20	98	2	81
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt + l L++ +e++ +++ + ++W +s+++ + ++r+ +qC+ kw++l +y +i+++e++++ + s +++y Rsa1.0_01377.1_g00004.1 20 WTLEDCLILVNEIAAIESDCSNALSSFQKWTMISDNCNALDVHRTFNQCRRKWDSLVSDYSQINKWESQQE-RGSGRHSY 98 9999999*************************************************************974.44434444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.5E-9	20	91	No hit	No description
PROSITE profile	PS50090	6.702	20	76	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEEGTSSGSR RTRSQVAPDW TLEDCLILVN EIAAIESDCS NALSSFQKWT MISDNCNALD 60 VHRTFNQCRR KWDSLVSDYS QINKWESQQE RGSGRHSYWS LSVEKRRKLN LPGSVDNELF 120 QAIDAVVMIQ ENRDGSEPDS DSDPDALEDF DVVDVTAELG SKRSRQRTMV VMKKENPPQK 180 RKTEDEETQR KNTIQEQRSK ATHQKKALEE KKKKKKPVVE ISTDEEEEEE TVSIEEEVKA 240 LEAKLGEKAD LIHAIVGRNL AKGSETGDDD DVGIEDKLKF VRQQGDELIA CLSEIANTLD 300 RYREVPTSKL SDR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	166	KRSRQR
2	209	216	EKKKKKKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01377.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450428.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A078GA25	1e-180	A0A078GA25_BRANA; BnaA08g12610D protein
STRING	Bra010246.1-P	1e-173	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	7e-97	sequence-specific DNA binding transcription factors