PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01378.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 400aa    MW: 44139.3 Da    PI: 5.1416
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01378.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.8e-29246303259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDg++WrKYGqK+v+g+ +prsYYrCt++gC+v+k+versa    +v+ tY g H+h 
  Rsa1.0_01378.1_g00001.1 246 DDGFRWRKYGQKVVTGNANPRSYYRCTYTGCKVTKHVERSAASMMLVVATYDGIHEHA 303
                              8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-28233305IPR003657WRKY domain
SuperFamilySSF1182904.45E-25239305IPR003657WRKY domain
PROSITE profilePS5081128.116240305IPR003657WRKY domain
SMARTSM007741.1E-33245304IPR003657WRKY domain
PfamPF031062.2E-22246302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSDYDGNFMD DLSPLSSPNI RGLIAMLDQN NNDRNPISET FPETNLSTNP QSEQRSGCLR  60
ESLAARRGFD IPPLEIGSIS PFANSFRNPI LVPSPILIIP PCPIPNGAPP EMVQISSAGD  120
QTMIIPNNNH PQGGSDDIPT EESFYITSHD SNACPIGAPL IPSSYSEVVV ETDVMNHISL  180
ENGGEEDDMD REYNHEKDKV EDHNVVVEPS SRKKRKMVVS NMMGVTRQNG TDMVIIQVES  240
EEDHPDDGFR WRKYGQKVVT GNANPRSYYR CTYTGCKVTK HVERSAASMM LVVATYDGIH  300
EHAPPPERIK KSGTKNQSGS SMSQDPSNQT LGLGRPHYSS SASQLFPSAL APQLDMTQFH  360
LSGLSKLPSL PVNKNHERKI GHVIPDGTEV FKVIWEQLFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21236305877Probable WRKY transcription factor 4
2lex_A1e-21236305877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01378.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466704.10.0PREDICTED: probable WRKY transcription factor 10, partial
TrEMBLA0A3P6BMP70.0A0A3P6BMP7_BRACM; Uncharacterized protein
STRINGBo3g180930.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.15e-71WRKY DNA-binding protein 10