PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01396.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 64aa    MW: 7311.37 Da    PI: 4.8675
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01396.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA28.22.6e-091231133
                     GATA 11 lWRrgpdgnktLCnaCGlyyrkk 33
                             ++R gp g++tLCnaCG +++ k
  Rsa1.0_01396.1_g00010.1  1 MMRCGPKGPRTLCNACGFMWANK 23
                             6799****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.105.6E-7126IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.2E-7123IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MMRCGPKGPR TLCNACGFMW ANKDANLEAD QMMMTVANDI NTSQSQCWLL LQARESETEF  60
DHLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01396.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-15ZIM-LIKE 2