PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01400.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 474aa MW: 52530.4 Da PI: 8.7367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01400.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.8	8.3e-18	229	278	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Rsa1.0_01400.1_g00008.1 229 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 278 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-23	226	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.225	227	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-19	228	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-15	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.30E-15	229	280	No hit	No description
SMART	SM00353	4.4E-13	233	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MELPQSRPFK AQGSHLKTHD FLQPLECVGG SKEETSRADT TRIASEKPPP LQHVLPGGIG 60 TYTISSIPYF SNHQRVPKPE LSPPMMFTAS GGVERNAVDV AAVASGFTLW DESGSGNKGQ 120 TRKENSAAGE RAGVATTIGQ WPVVEQRSQS LTNNNNPLSG FCSRSSSQGS GLKSQSFMDM 180 IRSAKGTSPD DDLDDDEDFI MKKESSSTSQ NHRDLRVKAS NDPKLNTPRS KHSATEQRRR 240 SKINDRFQML RQLIPNSDQK RDKASFLLEV IEYIQFLQEK TSKYETPYQG WNQEPAKLLN 300 WQRNNQQLVP EGTVSFAPKL EQEKNNIPVL ATAETLNRER FPLSVQSSSL FSPVIAGNPV 360 TELQARVASS EPAEPNPSSR SHTQPLKEEG DDEEGREGNN ISISSVYSQG LVKRLREALE 420 KSGVDLTKTS ISVEIELAKQ LSSFKNHEVC DPVSRTGNDK QTRKPKRLKT YSTS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MELPQSRPFK AQGSHLKTHD FLQPLECVGG SKEETSRADT TRIASEKPPP LQHVLPGGIG  60
TYTISSIPYF SNHQRVPKPE LSPPMMFTAS GGVERNAVDV AAVASGFTLW DESGSGNKGQ  120
TRKENSAAGE RAGVATTIGQ WPVVEQRSQS LTNNNNPLSG FCSRSSSQGS GLKSQSFMDM  180
IRSAKGTSPD DDLDDDEDFI MKKESSSTSQ NHRDLRVKAS NDPKLNTPRS KHSATEQRRR  240
SKINDRFQML RQLIPNSDQK RDKASFLLEV IEYIQFLQEK TSKYETPYQG WNQEPAKLLN  300
WQRNNQQLVP EGTVSFAPKL EQEKNNIPVL ATAETLNRER FPLSVQSSSL FSPVIAGNPV  360
TELQARVASS EPAEPNPSSR SHTQPLKEEG DDEEGREGNN ISISSVYSQG LVKRLREALE  420
KSGVDLTKTS ISVEIELAKQ LSSFKNHEVC DPVSRTGNDK QTRKPKRLKT YSTS

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01400.1_g00008.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353313	1e-165	AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018476799.1	0.0	PREDICTED: transcription factor BIM1-like isoform X2
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	M4CP31	0.0	M4CP31_BRARP; Uncharacterized protein
STRING	Bra005969.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	0.0	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]