PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01415.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CAMTA

Protein Properties

Length: 938aa MW: 106843 Da PI: 7.0536

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01415.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.5	1.6e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 +e +rwl+++ei+a+L n++ +++ ++ + pksg++++++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah Rsa1.0_01415.1_g00004.1 30 EEaYTRWLRPNEIHALLSNHNYFTINVKPVHLPKSGTILFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAH 115 55589******************************************************************************* PP CG-1 88 seenptfqrrcywlLeeelekivlvhylevk 118 +++nptf rrcywlL++++e+ivlvhy+e++ Rsa1.0_01415.1_g00004.1 116 GDDNPTFVRRCYWLLDKSQEHIVLVHYRETH 146 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.573	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.1E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.2E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.36E-14	390	476	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.06E-12	576	686	No hit	No description
Pfam	PF12796	1.0E-6	576	656	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.2E-15	577	689	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.11E-15	585	692	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.761	594	659	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.7E-6	627	656	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.808	627	659	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.181	776	802	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	260	791	813	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.3E-4	814	836	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.761	815	839	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.7E-5	816	836	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	890	912	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	891	920	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MAGVDSARLI GSEIHGFHTL QDLDIKTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH 60 LPKSGTILFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PLAEDNNSGV 180 RNPGEHESPD DLELLQSWLF FCAVHNFYNS LVARNHEISL HEINTLDWDE LLVEADISNQ 240 PSPTEDDVLY FTEQLQTAPM GSAQQGNHHA LYNGSTDIPS YLGLGDPVYQ NNSPCGAREF 300 SSQHLHCVVD PNQQTRDSSA AVANEQGDAL LNNGYGSQES FGKWVHNFIS DSPGSVDDPS 360 LEAVYTPGQE SSAPPAVFHP QSNIPDQIFN ITDVSPAWAY STEKTKILVT GFFHDSFQHF 420 GRSNLFCICG EVRVPAEFLQ MGVYRCFVPP QSPGIVNLYL SADGSKPISQ LFSFEHRSVP 480 VIEKVVPQED QLYKWEEFEF QVRLAHLLFT SSNKISVFSS KISPDNLLEA KKLASRTSHL 540 LNSWAYLMKS IQANEVPFDQ ARDHLFELTL KNRLKEWLLE KVIEDRNTKE YDSKGLGVIH 600 LCAVLGYTWS ILLFSWANIS LDFRDKHGWT ALHWAAYYGR EKMVAALLSA GARPNLVTDP 660 TKEYLGGCTA ADIAQQKGYE GLAAFLAEKC LVAQFRDMKM AGNISGNLEG IKAETSANPG 720 HSNEEEQSLK DTLAAYRTAA EAAARIQGAF REHELKVRSK AVRFASKEEE AKNIIAAMKI 780 QHAFRNYETR RKIAAAARIQ YRFQTWKMRR EFLNMRKKAI KIQAVFRGFQ VRRQYQKITW 840 SVGVLEKAIL RWRLKRRGFR GLQVSQPEAM EGTDVVEDFY KTSQKQAEDR LERSVVRVQA 900 MFRSKKAQQD YRRMKLAHEE AQLEYDGMQE LDHMAMES

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MAGVDSARLI GSEIHGFHTL QDLDIKTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH  60
LPKSGTILFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PLAEDNNSGV  180
RNPGEHESPD DLELLQSWLF FCAVHNFYNS LVARNHEISL HEINTLDWDE LLVEADISNQ  240
PSPTEDDVLY FTEQLQTAPM GSAQQGNHHA LYNGSTDIPS YLGLGDPVYQ NNSPCGAREF  300
SSQHLHCVVD PNQQTRDSSA AVANEQGDAL LNNGYGSQES FGKWVHNFIS DSPGSVDDPS  360
LEAVYTPGQE SSAPPAVFHP QSNIPDQIFN ITDVSPAWAY STEKTKILVT GFFHDSFQHF  420
GRSNLFCICG EVRVPAEFLQ MGVYRCFVPP QSPGIVNLYL SADGSKPISQ LFSFEHRSVP  480
VIEKVVPQED QLYKWEEFEF QVRLAHLLFT SSNKISVFSS KISPDNLLEA KKLASRTSHL  540
LNSWAYLMKS IQANEVPFDQ ARDHLFELTL KNRLKEWLLE KVIEDRNTKE YDSKGLGVIH  600
LCAVLGYTWS ILLFSWANIS LDFRDKHGWT ALHWAAYYGR EKMVAALLSA GARPNLVTDP  660
TKEYLGGCTA ADIAQQKGYE GLAAFLAEKC LVAQFRDMKM AGNISGNLEG IKAETSANPG  720
HSNEEEQSLK DTLAAYRTAA EAAARIQGAF REHELKVRSK AVRFASKEEE AKNIIAAMKI  780
QHAFRNYETR RKIAAAARIQ YRFQTWKMRR EFLNMRKKAI KIQAVFRGFQ VRRQYQKITW  840
SVGVLEKAIL RWRLKRRGFR GLQVSQPEAM EGTDVVEDFY KTSQKQAEDR LERSVVRVQA  900
MFRSKKAQQD YRRMKLAHEE AQLEYDGMQE LDHMAMES

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01415.1_g00004.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450972.1	0.0	PREDICTED: calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A3P6GMJ4	0.0	A0A3P6GMJ4_BRAOL; Uncharacterized protein
STRING	Bo8g043280.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]