PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01420.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 328aa    MW: 36980.5 Da    PI: 4.8995
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01420.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.94.2e-3599188298
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                              lfqrlwseeDei+lLqG+idfk+ tgksp++d+d+fye +kksisf++sk q  eKir+L+kK+ k+  +       s+sk+hd  
  Rsa1.0_01420.1_g00004.1  99 LFQRLWSEEDEISLLQGMIDFKSGTGKSPYEDMDGFYELIKKSISFEASKYQTAEKIRSLRKKYVKRGVE-------SISKSHDMG 177
                              79**************************************************************988777.......9******** PP

                   DUF573  88 ifelskkiWgs 98 
                              +f+lsk iWgs
  Rsa1.0_01420.1_g00004.1 178 CFNLSKYIWGS 188
                              *********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-27100187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGKKKLNPLE DPPKSSSSDD DEMETQSGEE EEAEEQISDD SDSSSSEEEK DGLWNPVIIP  60
PLKKPKTSVA SPSKQRSKRS SEEMEAPHAK KRSKKKKPLF QRLWSEEDEI SLLQGMIDFK  120
SGTGKSPYED MDGFYELIKK SISFEASKYQ TAEKIRSLRK KYVKRGVESI SKSHDMGCFN  180
LSKYIWGSNG LALKSNVKKS DSVKPHGQEV EKEVESDANL EVNGENGDKE EEDREMLVNG  240
KKVQVDKQVL VNGDSSASDW FEDSFLVGSI GSLGVGERFV KERWSMVAVE TKKKMEEKWK  300
LLQAKEMELV LEKTDFMREV GSVIAEAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096KRSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01420.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447683.10.0PREDICTED: probable transcription factor At1g61730
TrEMBLA0A078G1691e-149A0A078G169_BRANA; BnaC08g08690D protein
TrEMBLA0A3P6G1Y61e-149A0A3P6G1Y6_BRAOL; Uncharacterized protein
STRINGBo8g035460.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-67DNA-binding storekeeper protein-related transcriptional regulator