PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01444.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 69aa    MW: 8172.3 Da    PI: 9.5226
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01444.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             r +W++eE+  l+ ++ ++G+g W+ I +          R+  ++k++w++ 
  Rsa1.0_01444.1_g00010.1  5 RRKWSAEEEAALLAGICKYGPGKWSYIINDPEfrtqlSYRSNIDLKDKWRNM 56
                             789***************************999999989**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.501161IPR017930Myb domain
SuperFamilySSF466891.28E-15465IPR009057Homeodomain-like
SMARTSM007173.0E-4459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-14557IPR009057Homeodomain-like
CDDcd116601.72E-17657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MYAQRRKWSA EEEAALLAGI CKYGPGKWSY IINDPEFRTQ LSYRSNIDLK DKWRNMTTKE  60
ESKTLVNQI
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01444.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077814.13e-22Homeodomain-like/winged-helix DNA-binding family protein
RefseqNP_177418.23e-22Homeodomain-like/winged-helix DNA-binding family protein
SwissprotF4IEY43e-23TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A397Y6S33e-39A0A397Y6S3_BRACM; Uncharacterized protein
TrEMBLM4EQ233e-39M4EQ23_BRARP; Uncharacterized protein
STRINGBra030894.1-P5e-40(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16580812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-25MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]