PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01456.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 289aa    MW: 33327.4 Da    PI: 4.9014
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01456.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.33.1e-29124211291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH
  Rsa1.0_01456.1_g00005.1 124 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNH 207
                              9******************************************999..999*********************************** PP

                     FAR1  88 elap 91 
                              +l+p
  Rsa1.0_01456.1_g00005.1 208 PLMP 211
                              *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-27124211IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MFLLTVGWFV LFVQEVVYLL GIAVDFRIDN GDAAGMMMEI PVENHNEMDE SSGQAMTLEQ  60
DDENHNEIGE SSNQAMPLEQ DEKVDPDSIP LDVSDMAEEE EEEVQGDEPY VGQEFESEAA  120
AHGFYNAYAT KVGFVIRVSK LSRSRHDGSP IGRQLVCNKE GYRLPSKRDK VIRQRAETRV  180
GCRAMILIRK ENSGKWVITK FAKEHNHPLM PGRVRRGCIY DQYPNEHDKI QELMQQLAAE  240
KKRAATYKRH LEMLFEQIEQ HNESLTKKIQ HIVDNVRDLE QRDHQQNQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01456.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487129.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBLA0A3P5YSU90.0A0A3P5YSU9_BRACM; Uncharacterized protein (Fragment)
STRINGBo8g093280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-161FAR1 family protein